Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPG32_RS06820 Genome accession   NZ_CP094073
Coordinates   1432723..1434036 (-) Length   437 a.a.
NCBI ID   WP_245036860.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe104     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1427723..1439036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG32_RS06790 (MPG32_06790) nadC 1428186..1429007 (-) 822 WP_245036858.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPG32_RS06795 (MPG32_06795) nadA 1429007..1430017 (-) 1011 WP_245036859.1 quinolinate synthase NadA -
  MPG32_RS06800 (MPG32_06800) - 1430004..1430810 (-) 807 WP_050835328.1 phosphatidylserine decarboxylase -
  MPG32_RS06805 (MPG32_06805) - 1430807..1431310 (-) 504 WP_000953102.1 hypothetical protein -
  MPG32_RS06810 (MPG32_06810) - 1431323..1431817 (-) 495 WP_015645602.1 hypothetical protein -
  MPG32_RS06815 (MPG32_06815) mqnP 1431810..1432694 (-) 885 WP_096419314.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPG32_RS06820 (MPG32_06820) comEC/comE3 1432723..1434036 (-) 1314 WP_245036860.1 ComEC/Rec2 family competence protein Machinery gene
  MPG32_RS06825 (MPG32_06825) - 1434033..1435493 (-) 1461 WP_245036861.1 replicative DNA helicase -
  MPG32_RS06830 (MPG32_06830) - 1435504..1436898 (-) 1395 WP_245036862.1 NAD(P)H-hydrate dehydratase -
  MPG32_RS06835 (MPG32_06835) crdS 1436901..1438103 (-) 1203 WP_245037548.1 copper-sensing histidine kinase CrdS -
  MPG32_RS06840 (MPG32_06840) crdR 1438069..1438710 (-) 642 WP_001169802.1 copper response regulator transcription factor CrdR -
  MPG32_RS06845 (MPG32_06845) - 1438797..1439021 (-) 225 Protein_1334 restriction endonuclease -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50182.14 Da        Isoelectric Point: 9.8515

>NTDB_id=666444 MPG32_RS06820 WP_245036860.1 1432723..1434036(-) (comEC/comE3) [Helicobacter pylori strain Hpfe104]
MKDKTFQGAFELLATPKEYLLCGVILSLLLAFNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYATIKEPLKNLQYRHAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHWRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASMYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLVRSFQVISLS
VLVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDSILNMPLTIPTIFVFSPLWLLGAHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSSIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=666444 MPG32_RS06820 WP_245036860.1 1432723..1434036(-) (comEC/comE3) [Helicobacter pylori strain Hpfe104]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTGCAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGTTCAATCTTTATTTAGAATATTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCCAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCATGCACAATTTTTTGGCAAAATCAAACCTTGCTC
ATTTTTGGAGTCTCTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGAAAACAAGATTTCAAATCGCATT
GGCGCCATTTCATTGACAGCGCTCATTCAAGCGCTTTAGTGGGTAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGAATCAACCACTTACTAGCCATTAGCGGGTTCCATTTAGGGATTTT
GAGCGCGAGTATGTATTTCCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCTTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTTTTAAAGCACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGTGCGATCTTTTCAGGTCATAAGCTTAAGC
GTATTGGTGTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGCTTGTTTTTGCATGCTGTGGGTTTGGGGTCTTTGCTGGATTCCA
TTTTAAACATGCCTTTAACAATCCCTACGATTTTTGTTTTTTCGCCTTTATGGCTTTTAGGGGCGCATTTATTTTTAACG
ATTCTAAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTCAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.508

100

0.945