Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG464_RS03835 Genome accession   NZ_CP108781
Coordinates   932882..933517 (+) Length   211 a.a.
NCBI ID   WP_330451679.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00890     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 927882..938517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG464_RS03810 (OG464_03800) - 928852..929586 (+) 735 WP_329023033.1 lysophospholipid acyltransferase family protein -
  OG464_RS03815 (OG464_03805) - 929630..930679 (+) 1050 WP_330451677.1 NAD-dependent epimerase/dehydratase family protein -
  OG464_RS03820 (OG464_03810) - 930696..931325 (-) 630 WP_329023037.1 TetR/AcrR family transcriptional regulator -
  OG464_RS03825 (OG464_03815) - 931434..932426 (+) 993 WP_330451678.1 ABC transporter permease -
  OG464_RS03830 (OG464_03820) - 932501..932785 (-) 285 WP_018522806.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  OG464_RS03835 (OG464_03825) clpP 932882..933517 (+) 636 WP_330451679.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG464_RS03840 (OG464_03830) - 933525..933833 (+) 309 WP_093710866.1 hypothetical protein -
  OG464_RS03845 (OG464_03835) - 934339..934812 (+) 474 WP_329023043.1 C40 family peptidase -
  OG464_RS03850 (OG464_03840) - 934829..935260 (-) 432 WP_329023045.1 ATP-binding protein -
  OG464_RS03855 (OG464_03845) - 935465..936325 (+) 861 WP_018522801.1 helix-turn-helix transcriptional regulator -
  OG464_RS03860 (OG464_03850) - 936351..936548 (+) 198 WP_026242933.1 DUF397 domain-containing protein -
  OG464_RS03865 (OG464_03855) - 936562..937704 (-) 1143 WP_330451681.1 8-amino-7-oxononanoate synthase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22797.95 Da        Isoelectric Point: 5.0754

>NTDB_id=666434 OG464_RS03835 WP_330451679.1 932882..933517(+) (clpP) [Streptomyces sp. NBC_00890]
MHRPVVARHVLPEFTERTSRGSRTLDPYSKLLGDRIAFLGTALDETAANDLVAQLMYLEYDAPDRPVSLYINSPGGSFGA
MTALYDTMAFLSCEVETYCLGRAGAGAAVLLAAGAPGRRYMLPGATVVLSQPALDEPVQGQPSDLEIEARELARMRGTMT
GMLARHTGRSVEQITEDTERDLVLDAEGAVAHGIIDHVVRSRVPLPPYSAR

Nucleotide


Download         Length: 636 bp        

>NTDB_id=666434 OG464_RS03835 WP_330451679.1 932882..933517(+) (clpP) [Streptomyces sp. NBC_00890]
GTGCACCGTCCCGTCGTCGCCCGTCACGTCCTGCCCGAGTTCACCGAGCGCACCTCCCGGGGATCCCGAACCCTCGACCC
GTACTCCAAGCTGCTGGGCGACCGCATCGCCTTCCTCGGTACGGCCCTCGACGAGACGGCCGCCAACGACCTGGTGGCCC
AGCTGATGTACCTGGAGTACGACGCGCCGGACCGGCCCGTCTCGCTGTACATCAACTCGCCGGGCGGCTCGTTCGGCGCG
ATGACGGCCCTCTACGACACGATGGCGTTCCTCAGCTGCGAGGTGGAGACCTACTGCCTGGGCCGGGCGGGGGCCGGCGC
GGCCGTGCTGCTCGCCGCGGGCGCTCCGGGGCGGCGGTACATGCTGCCGGGCGCCACCGTGGTGCTGAGCCAGCCCGCGT
TGGACGAGCCGGTGCAGGGCCAGCCGTCCGACCTGGAGATCGAGGCGCGCGAACTGGCCCGGATGCGCGGGACCATGACC
GGCATGCTGGCCCGGCACACGGGGCGCTCCGTCGAGCAGATCACCGAGGACACCGAGCGCGACCTGGTCCTGGACGCGGA
AGGGGCCGTGGCCCACGGGATCATCGACCATGTCGTGCGGAGCCGCGTCCCGCTGCCGCCGTACTCCGCTCGGTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(20-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

43.979

90.521

0.398