Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   MPG32_RS00010 Genome accession   NZ_CP094073
Coordinates   1589..3022 (+) Length   477 a.a.
NCBI ID   WP_245036911.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe104     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG32_RS00005 (MPG32_00005) dnaA 1..1368 (+) 1368 WP_245036909.1 chromosomal replication initiator protein DnaA -
  MPG32_RS00010 (MPG32_00010) comH 1589..3022 (+) 1434 WP_245036911.1 competence protein Machinery gene
  MPG32_RS00020 (MPG32_00020) - 3200..3952 (+) 753 WP_245019605.1 exodeoxyribonuclease III -
  MPG32_RS00025 (MPG32_00025) - 3949..4584 (-) 636 WP_001920235.1 outer membrane protein -
  MPG32_RS00030 (MPG32_00030) - 4588..4941 (-) 354 WP_053459829.1 hypothetical protein -
  MPG32_RS00035 (MPG32_00035) recG 5023..6888 (+) 1866 WP_245036913.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54646.55 Da        Isoelectric Point: 6.8740

>NTDB_id=666429 MPG32_RS00010 WP_245036911.1 1589..3022(+) (comH) [Helicobacter pylori strain Hpfe104]
MKKTLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KPSLETTLNPNRPTIPRNTQIVFSSKELKELHQMPSLNAPIQKPQNKPTSSQQSLQNFSYPEFKLGSKNPKNSLLQPLAT
PSKISSANEVKTPTNDTKPPLKHSSEDQENNLFVAPPTEKTLPNNTPNADINEHNESNENRDNVEKQAIRDPNIREFACG
KWVYDDENLQAYRPSILKRVDEDKQTATDITPCDYSNAENKSGKITTPYTKISVHKTEPLEEPQTFEAKNNFTILQARSS
TEKCKRARARKDGTIRQCYLIEEPLKQAWESEYQITTQLVKATYERPKQDDQTEPTFYETSELAYSSTRKSEITHNELNL
NDKFMEFVEVYEGHYLNDIVKESSEYKEWVKNHVHLKEGVCMVLEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=666429 MPG32_RS00010 WP_245036911.1 1589..3022(+) (comH) [Helicobacter pylori strain Hpfe104]
ATGAAAAAAACCCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGA
AATCAAAACTTCGCCGCATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACTATCACCCACATATCCACTGCAATTGTCTATCAACCCCTTGATGAA
AAACCTTCTTTAGAAACGACATTAAACCCTAACCGCCCTACTATTCCCAGAAACACCCAAATTGTTTTTTCTTCAAAAGA
ATTGAAAGAGCTGCACCAAATGCCTTCTTTAAACGCGCCCATACAAAAACCACAAAACAAGCCCACTTCATCGCAACAAT
CTCTTCAAAACTTTTCTTACCCAGAGTTCAAACTAGGCTCTAAAAACCCTAAAAACAGCCTTTTACAGCCTTTAGCTACT
CCTAGTAAAATAAGCTCCGCTAATGAAGTTAAAACGCCCACAAACGACACTAAACCCCCTTTAAAGCATTCTTCAGAAGA
TCAAGAAAACAACCTCTTTGTAGCACCACCCACTGAAAAAACGCTCCCTAACAACACCCCTAACGCTGATATTAATGAAC
ACAATGAAAGCAATGAGAATAGGGATAATGTGGAAAAACAAGCGATTAGAGATCCTAATATTAGAGAATTTGCGTGCGGA
AAGTGGGTCTATGATGATGAAAATTTACAAGCCTATCGCCCAAGCATTTTAAAACGCGTTGATGAAGACAAACAGACTGC
AACAGACATTACCCCTTGCGATTACAGCAACGCTGAAAATAAAAGCGGTAAAATCACTACCCCCTATACTAAAATCTCTG
TTCATAAAACAGAGCCTTTAGAAGAGCCGCAAACCTTTGAAGCTAAAAACAATTTTACCATTCTCCAAGCCAGAAGCTCT
ACAGAAAAATGCAAAAGGGCCAGAGCGCGAAAAGACGGCACGATTAGGCAATGCTATCTCATAGAAGAGCCTTTAAAACA
AGCGTGGGAGAGCGAGTATCAAATCACCACGCAATTAGTGAAAGCCACTTATGAGCGCCCCAAACAAGACGATCAAACAG
AGCCGACTTTCTATGAAACCAGCGAATTAGCTTATTCTTCCACACGAAAAAGCGAAATAACGCATAATGAATTGAATTTG
AATGATAAGTTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAGTCAAAGAAAGCAGTGAATACAA
AGAATGGGTTAAAAACCATGTGCATTTAAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAGCAACCACGAGCCAAAA
GCACGCCTTTGAGCATTGAAAACTCTCGTGTTGTTTGCGTTAAAAAAGGGAATTATTTATTCAACGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

92.067

100

0.925