Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPG62_RS07160 Genome accession   NZ_CP094071
Coordinates   1498604..1498885 (-) Length   93 a.a.
NCBI ID   WP_001272690.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe106     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1493604..1503885
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG62_RS07140 (MPG62_07140) - 1494315..1495655 (-) 1341 WP_245100147.1 hypothetical protein -
  MPG62_RS07150 (MPG62_07150) comB4 1495976..1498339 (-) 2364 WP_245099139.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG62_RS07155 (MPG62_07155) comB3 1498341..1498604 (-) 264 WP_000584973.1 hypothetical protein Machinery gene
  MPG62_RS07160 (MPG62_07160) comB2 1498604..1498885 (-) 282 WP_001272690.1 TrbC/VirB2 family protein Machinery gene
  MPG62_RS07165 (MPG62_07165) - 1499031..1499858 (-) 828 WP_245099140.1 DUF5718 family protein -
  MPG62_RS07170 (MPG62_07170) - 1499950..1501002 (-) 1053 WP_245099142.1 MnmA/TRMU family protein -
  MPG62_RS07175 (MPG62_07175) dnaG 1500999..1502678 (-) 1680 WP_245099143.1 DNA primase -
  MPG62_RS07180 (MPG62_07180) groES 1502956..1503318 (+) 363 WP_245050947.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10525.78 Da        Isoelectric Point: 9.1450

>NTDB_id=666428 MPG62_RS07160 WP_001272690.1 1498604..1498885(-) (comB2) [Helicobacter pylori strain Hpfe106]
MSAHFLKIVFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=666428 MPG62_RS07160 WP_001272690.1 1498604..1498885(-) (comB2) [Helicobacter pylori strain Hpfe106]
ATGTCCGCTCATTTTTTAAAAATCGTTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCTCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAGGCCCCGAGTTTAGCGAATTGGTTTATGGGGATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(7-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

100

100

1