Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   MPG62_RS07155 Genome accession   NZ_CP094071
Coordinates   1498341..1498604 (-) Length   87 a.a.
NCBI ID   WP_000584973.1    Uniprot ID   G2MDJ4
Organism   Helicobacter pylori strain Hpfe106     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1493341..1503604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG62_RS07140 (MPG62_07140) - 1494315..1495655 (-) 1341 WP_245100147.1 hypothetical protein -
  MPG62_RS07150 (MPG62_07150) comB4 1495976..1498339 (-) 2364 WP_245099139.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG62_RS07155 (MPG62_07155) comB3 1498341..1498604 (-) 264 WP_000584973.1 hypothetical protein Machinery gene
  MPG62_RS07160 (MPG62_07160) comB2 1498604..1498885 (-) 282 WP_001272690.1 TrbC/VirB2 family protein Machinery gene
  MPG62_RS07165 (MPG62_07165) - 1499031..1499858 (-) 828 WP_245099140.1 DUF5718 family protein -
  MPG62_RS07170 (MPG62_07170) - 1499950..1501002 (-) 1053 WP_245099142.1 MnmA/TRMU family protein -
  MPG62_RS07175 (MPG62_07175) dnaG 1500999..1502678 (-) 1680 WP_245099143.1 DNA primase -
  MPG62_RS07180 (MPG62_07180) groES 1502956..1503318 (+) 363 WP_245050947.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10034.13 Da        Isoelectric Point: 9.5290

>NTDB_id=666427 MPG62_RS07155 WP_000584973.1 1498341..1498604(-) (comB3) [Helicobacter pylori strain Hpfe106]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFVPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIVAKSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=666427 MPG62_RS07155 WP_000584973.1 1498341..1498604(-) (comB3) [Helicobacter pylori strain Hpfe106]
ATGATTATCCTCTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAATC
TTATTTGATTTCTGTTTTTGTGCCTTTTATTTTGCTCCCTTGGATTGATTTATTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGACATTGCAGATATTATCGTGGCTAAAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

98.851

100

0.989