Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPG62_RS07035 Genome accession   NZ_CP094071
Coordinates   1470708..1472021 (-) Length   437 a.a.
NCBI ID   WP_245099113.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe106     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1465708..1477021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG62_RS07005 (MPG62_07005) nadC 1466171..1466992 (-) 822 WP_245099107.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPG62_RS07010 (MPG62_07010) nadA 1466992..1468002 (-) 1011 WP_154479171.1 quinolinate synthase NadA -
  MPG62_RS07015 (MPG62_07015) - 1467989..1468795 (-) 807 WP_245099109.1 phosphatidylserine decarboxylase -
  MPG62_RS07020 (MPG62_07020) - 1468792..1469295 (-) 504 WP_000953102.1 hypothetical protein -
  MPG62_RS07025 (MPG62_07025) - 1469308..1469802 (-) 495 WP_050835327.1 hypothetical protein -
  MPG62_RS07030 (MPG62_07030) mqnP 1469795..1470637 (-) 843 WP_245099111.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPG62_RS07035 (MPG62_07035) comEC/comE3 1470708..1472021 (-) 1314 WP_245099113.1 ComEC/Rec2 family competence protein Machinery gene
  MPG62_RS07040 (MPG62_07040) - 1472018..1473484 (-) 1467 WP_245099115.1 replicative DNA helicase -
  MPG62_RS07045 (MPG62_07045) - 1473495..1474889 (-) 1395 WP_245099118.1 NAD(P)H-hydrate dehydratase -
  MPG62_RS07050 (MPG62_07050) crdS 1474892..1476094 (-) 1203 WP_075653460.1 copper-sensing histidine kinase CrdS -
  MPG62_RS07055 (MPG62_07055) crdR 1476060..1476701 (-) 642 WP_245099119.1 copper response regulator transcription factor CrdR -
  MPG62_RS07060 (MPG62_07060) - 1476784..1477008 (-) 225 Protein_1378 restriction endonuclease subunit R -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50155.17 Da        Isoelectric Point: 9.7740

>NTDB_id=666424 MPG62_RS07035 WP_245099113.1 1470708..1472021(-) (comEC/comE3) [Helicobacter pylori strain Hpfe106]
MKDKTFQGAFELLTTPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYATIKEPLKNLQYRYAQFFGKIKPCSFLESMKSCFFQTYSFSLTRKQDFKSHWRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSVSVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKSSSFLMRSFQAISLS
VLVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLLLHAVGLGSLLDHILDMPLTIPTISIPSPLWLLGAHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=666424 MPG62_RS07035 WP_245099113.1 1470708..1472021(-) (comEC/comE3) [Helicobacter pylori strain Hpfe106]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATATTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGCTAGCGCTCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACCAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTACGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTTTTGGAGTCTATGAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGAAAACAAGATTTCAAATCGCATT
GGCGCCATTTCATTGACAGCGCTCATTCAAGCGCTTTAGTGGGTAATTTGTATCGCGCGTTATTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGACAGGGCTAACGCGCTAGGGATCAACCACTTATTAGCCATTAGCGGGTTCCATTTAGGGATTTT
GAGCGTTAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCTTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAGCTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTTTTAAAACACACTCAAGCCTTTTTTAAATCCTCTTCTTTTTTAATGCGATCTTTTCAAGCCATAAGCTTAAGC
GTGCTGGTGTTTTTGAACATGCTCATTATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTACTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATCATA
TTTTAGACATGCCTTTAACAATCCCTACGATTTCAATCCCTTCGCCTTTATGGCTTTTGGGGGCGCATTTATTTTTAACG
ATTCTGAGTGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGCTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-377)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

95.195

100

0.952