Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPG62_RS05550 Genome accession   NZ_CP094071
Coordinates   1163739..1164143 (-) Length   134 a.a.
NCBI ID   WP_245098705.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe106     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1158739..1169143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG62_RS05500 (MPG62_05500) - 1158918..1160002 (-) 1085 Protein_1069 hypothetical protein -
  MPG62_RS05505 (MPG62_05505) - 1159992..1160777 (-) 786 WP_245098688.1 hypothetical protein -
  MPG62_RS05510 (MPG62_05510) - 1160777..1161163 (-) 387 WP_245098689.1 DUF1294 domain-containing protein -
  MPG62_RS05515 (MPG62_05515) - 1161489..1161650 (-) 162 WP_245026627.1 lysozyme -
  MPG62_RS05520 (MPG62_05520) - 1161670..1161879 (-) 210 WP_245098692.1 lysozyme -
  MPG62_RS05525 (MPG62_05525) - 1161833..1162165 (-) 333 WP_245098695.1 lysozyme -
  MPG62_RS05530 (MPG62_05530) - 1162176..1162736 (-) 561 WP_245098698.1 hypothetical protein -
  MPG62_RS05535 (MPG62_05535) - 1162720..1163058 (-) 339 WP_000699916.1 hypothetical protein -
  MPG62_RS05540 (MPG62_05540) - 1163246..1163449 (-) 204 WP_245098700.1 sel1 repeat family protein -
  MPG62_RS05545 (MPG62_05545) - 1163434..1163679 (-) 246 WP_245098702.1 hypothetical protein -
  MPG62_RS05550 (MPG62_05550) dprB 1163739..1164143 (-) 405 WP_245098705.1 Holliday junction resolvase RuvX Machinery gene
  MPG62_RS05555 (MPG62_05555) dprA 1164140..1164940 (-) 801 WP_245098708.1 DNA-processing protein DprA Machinery gene
  MPG62_RS05560 (MPG62_05560) minE 1164947..1165180 (-) 234 WP_000051414.1 cell division topological specificity factor MinE -
  MPG62_RS05565 (MPG62_05565) minD 1165177..1165983 (-) 807 WP_120831088.1 septum site-determining protein MinD -
  MPG62_RS05570 (MPG62_05570) ilvC 1166007..1166999 (-) 993 WP_245098711.1 ketol-acid reductoisomerase -
  MPG62_RS05580 (MPG62_05580) - 1167257..1168039 (+) 783 WP_245098714.1 NAD+ synthase -
  MPG62_RS05585 (MPG62_05585) - 1168036..1168974 (+) 939 WP_245098715.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15244.65 Da        Isoelectric Point: 7.2160

>NTDB_id=666420 MPG62_RS05550 WP_245098705.1 1163739..1164143(-) (dprB) [Helicobacter pylori strain Hpfe106]
MILACDVGLKRIGIAMLLNGVILPLEAILRHNRNQASRDLSDLLREKNVQVLVVGKPNESYADTNARIEHFIKLLDFEGE
IVFINEDSSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKDR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=666420 MPG62_RS05550 WP_245098705.1 1163739..1164143(-) (dprB) [Helicobacter pylori strain Hpfe106]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTATGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTGCGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACGTTCAGGTGCTAGTGG
TAGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCACGCATTGAACATTTCATCAAACTTTTGGATTTTGAGGGCGAA
ATCGTTTTTATTAATGAGGACAGCTCTAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTAAAAGATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

93.985

99.254

0.933