Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   MPG62_RS00010 Genome accession   NZ_CP094071
Coordinates   1589..3022 (+) Length   477 a.a.
NCBI ID   WP_245099279.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe106     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG62_RS00005 (MPG62_00005) dnaA 1..1368 (+) 1368 WP_245099276.1 chromosomal replication initiator protein DnaA -
  MPG62_RS00010 (MPG62_00010) comH 1589..3022 (+) 1434 WP_245099279.1 competence protein Machinery gene
  MPG62_RS00020 (MPG62_00020) - 3202..3954 (+) 753 WP_101004834.1 exodeoxyribonuclease III -
  MPG62_RS00025 (MPG62_00025) - 3951..4586 (-) 636 WP_180449731.1 outer membrane protein -
  MPG62_RS00030 (MPG62_00030) - 4590..4943 (-) 354 WP_000837005.1 hypothetical protein -
  MPG62_RS00035 (MPG62_00035) recG 5025..6896 (+) 1872 WP_245099281.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54680.80 Da        Isoelectric Point: 7.9066

>NTDB_id=666410 MPG62_RS00010 WP_245099279.1 1589..3022(+) (comH) [Helicobacter pylori strain Hpfe106]
MKKTLCLSFFLAFSNPLQALVIELLKEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETTLNPNRPTIPRNTQIVFSSKELKEPHQMPSLNAPMQKPQNKPTSSQQSLQNFPYTESKLGSKNPKNSLLQPLAT
PNKISSANEVKTPTNDTKPPLKYSSEDQENNLFVAPPTEKTLPNNTPNANINEHNESNENRDSVEKQAIRDPNIKEFACG
KWVYDDENLQAYRPSILKRVDEDKQTATDITPCDYSNAENKSGKIITPYTKISVHKTEPLEEPQTFEAKNNFTILQARSS
TEKCKRARARKDGTTRQCYLIEEPLKQAWESEYQITTQLVKAIYERPKQDDQVEPTFYETSELAYSSTRKSEITRNELNL
NEKFMEFVEVYEGHYLNDIVKESSEYKEWVKNHVRFKEGVCMVLEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=666410 MPG62_RS00010 WP_245099279.1 1589..3022(+) (comH) [Helicobacter pylori strain Hpfe106]
ATGAAAAAAACCCTTTGTCTGTCTTTCTTTCTGGCTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAAAAGA
AATCAAAACTTCGCCGCATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACTATCACCCACATATCCACTGCAATTGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGACCTTAAACCCTAACCGCCCTACTATTCCTAGAAACACCCAAATTGTTTTTTCTTCAAAAGA
ATTGAAAGAGCCGCACCAAATGCCTTCTTTAAACGCGCCCATGCAAAAACCACAAAACAAACCCACTTCATCGCAGCAAT
CTCTTCAAAACTTTCCTTACACAGAGTCCAAACTAGGCTCTAAAAACCCTAAAAACAGCCTTTTACAGCCTTTAGCCACT
CCTAATAAAATAAGCTCTGCTAATGAAGTTAAAACGCCAACAAACGACACTAAACCCCCTTTAAAGTATTCTTCAGAAGA
TCAAGAAAACAATCTCTTTGTAGCGCCACCCACTGAAAAAACGCTCCCTAACAACACCCCTAACGCTAATATTAATGAAC
ACAATGAAAGCAATGAGAATAGAGATAGTGTGGAAAAACAAGCGATTAGAGATCCTAATATTAAAGAATTTGCGTGCGGG
AAGTGGGTCTATGATGATGAAAATTTACAAGCCTATCGCCCAAGCATTTTAAAACGCGTTGATGAAGACAAACAGACTGC
GACAGACATTACCCCTTGCGACTACAGCAACGCTGAAAATAAAAGCGGTAAAATCATTACCCCCTATACTAAAATCTCTG
TTCATAAAACAGAGCCTTTAGAAGAGCCACAAACTTTTGAAGCTAAAAACAATTTTACAATTCTTCAAGCCAGAAGCTCT
ACAGAAAAATGCAAAAGGGCCAGAGCGCGAAAAGACGGCACAACTAGGCAATGCTATCTGATAGAAGAGCCTTTAAAACA
AGCGTGGGAGAGTGAATATCAAATCACCACACAATTAGTGAAAGCCATTTATGAGCGCCCCAAACAAGACGATCAAGTGG
AGCCAACTTTTTATGAAACCAGCGAATTAGCTTATTCTTCCACACGAAAAAGCGAAATAACGCGCAATGAACTGAATTTG
AATGAAAAGTTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAGTCAAAGAAAGCAGTGAATACAA
AGAATGGGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAGCAACCACGAGCTAAAA
GCACGCCTTTGAGTATTGAAAACTCTCGTGTTGTTTGTGTCAAAAAGGGGAATTATTTATTCAACGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

92.484

100

0.929