Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPG33_RS02690 Genome accession   NZ_CP094070
Coordinates   541925..542329 (+) Length   134 a.a.
NCBI ID   WP_180530802.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe107     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 536925..547329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG33_RS02655 (MPG33_02655) - 537098..538036 (-) 939 WP_245063030.1 tetraacyldisaccharide 4'-kinase -
  MPG33_RS02660 (MPG33_02660) - 538033..538815 (-) 783 WP_245048521.1 NAD+ synthase -
  MPG33_RS02670 (MPG33_02670) ilvC 539063..540055 (+) 993 WP_245063031.1 ketol-acid reductoisomerase -
  MPG33_RS02675 (MPG33_02675) minD 540080..540886 (+) 807 WP_001019098.1 septum site-determining protein MinD -
  MPG33_RS02680 (MPG33_02680) minE 540883..541116 (+) 234 WP_000051412.1 cell division topological specificity factor MinE -
  MPG33_RS02685 (MPG33_02685) dprA 541128..541928 (+) 801 WP_245063032.1 DNA-processing protein DprA Machinery gene
  MPG33_RS02690 (MPG33_02690) dprB 541925..542329 (+) 405 WP_180530802.1 Holliday junction resolvase RuvX Machinery gene
  MPG33_RS02695 (MPG33_02695) - 542440..542694 (+) 255 WP_245063033.1 tetratricopeptide repeat protein -
  MPG33_RS02700 (MPG33_02700) - 542883..543221 (+) 339 WP_245048518.1 hypothetical protein -
  MPG33_RS02705 (MPG33_02705) - 543205..543765 (+) 561 WP_245063034.1 hypothetical protein -
  MPG33_RS02710 (MPG33_02710) - 544031..544276 (+) 246 WP_245063035.1 lysozyme -
  MPG33_RS02715 (MPG33_02715) - 544296..544457 (+) 162 WP_001871784.1 hypothetical protein -
  MPG33_RS02720 (MPG33_02720) - 544798..545184 (+) 387 WP_245048515.1 DUF1294 domain-containing protein -
  MPG33_RS02725 (MPG33_02725) - 545184..545969 (+) 786 WP_245048514.1 hypothetical protein -
  MPG33_RS02730 (MPG33_02730) - 545959..547047 (+) 1089 WP_245063036.1 hypothetical protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15442.98 Da        Isoelectric Point: 9.8987

>NTDB_id=666400 MPG33_RS02690 WP_180530802.1 541925..542329(+) (dprB) [Helicobacter pylori strain Hpfe107]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYTDTNARIEYFIKLLDFKGE
IVFINEDRSSIEAYENLERLGRKNKRLAIKDGRLDSLSACRILERYYQQVLKKR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=666400 MPG33_RS02690 WP_180530802.1 541925..542329(+) (dprB) [Helicobacter pylori strain Hpfe107]
GTGATTTTGGCATGCGATGTGGGCTTAAAACGCATTGGGATCGCTGCGCTTTTAAACGGCGTTATTTTACCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTGTTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAACGAAAGCTATACGGACACGAACGCGCGCATTGAATATTTCATCAAGCTTTTGGATTTTAAGGGTGAA
ATCGTTTTTATTAATGAAGATAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCGTTTGGGTAGGAAAAACAAGCGGCT
CGCTATTAAAGACGGTCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTACCAGCAGGTTTTAAAAAAGC
GTTGA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

93.939

98.507

0.925