Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   OH827_RS16560 Genome accession   NZ_CP108779
Coordinates   3752500..3753630 (-) Length   376 a.a.
NCBI ID   WP_329027218.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00891     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3747500..3758630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH827_RS16550 (OH827_16540) gyrB 3749489..3751576 (-) 2088 WP_329027216.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  OH827_RS16555 (OH827_16545) - 3751943..3752503 (-) 561 WP_330452846.1 DciA family protein -
  OH827_RS16560 (OH827_16550) recF 3752500..3753630 (-) 1131 WP_329027218.1 DNA replication/repair protein RecF Machinery gene
  OH827_RS16565 (OH827_16555) gnd 3753715..3754593 (-) 879 WP_132900532.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  OH827_RS16570 (OH827_16560) dnaN 3754722..3755852 (-) 1131 WP_018522091.1 DNA polymerase III subunit beta -
  OH827_RS16575 (OH827_16565) dnaA 3756789..3758597 (-) 1809 WP_330452847.1 chromosomal replication initiator protein DnaA -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 40636.22 Da        Isoelectric Point: 6.8617

>NTDB_id=666394 OH827_RS16560 WP_329027218.1 3752500..3753630(-) (recF) [Streptomyces sp. NBC_00891]
MHVTHLSLADFRSYARVEVPLDPGVTAFVGANGQGKTNLVEAVGYLATLGSHRVSSDAPLVRMGAERAVIRAAVTQGERS
QLVELELNPGRANRARINRSSQVRPRDVLGIVRTVLFAPEDLALVKGDPGERRRFLDELVTARSPRMAGVRSDYERVLKQ
RNTLLKSAAMARRHGGRSLDLSTLDVWDQHLAGVGAELLAQRLDLIAVLQPLADKAYGDVAPGGGPVTLDYRSSVGAEAG
PARTREELYAQIIEALAGVRKQEIERGVTLVGPHRDDLVLGLRSMPAKGYASHGESWSYALALRLASYELLRGEGNEPVL
VLDDVFAELDARRRERLAELVAPAEQVLVTAAVDDDVPGALAGTRYAVTAGEVERV

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=666394 OH827_RS16560 WP_329027218.1 3752500..3753630(-) (recF) [Streptomyces sp. NBC_00891]
ATGCACGTCACGCATCTGTCGCTGGCCGACTTCCGCTCGTACGCCCGGGTCGAGGTGCCTCTCGACCCGGGCGTCACCGC
GTTCGTGGGGGCCAACGGCCAGGGCAAGACGAATCTGGTCGAGGCCGTCGGCTATCTCGCCACGCTCGGCAGTCACCGCG
TCTCCTCGGACGCCCCGCTCGTCCGCATGGGCGCCGAGCGTGCCGTGATCAGGGCGGCCGTCACCCAGGGCGAGCGTTCG
CAGCTGGTCGAGCTGGAGCTCAACCCGGGCCGGGCCAACCGCGCCCGCATCAACAGGTCCTCGCAGGTCAGGCCGCGTGA
CGTGCTCGGCATCGTGCGGACGGTGCTGTTCGCGCCGGAGGATCTGGCCCTGGTGAAGGGCGACCCCGGCGAGCGACGGC
GGTTCCTGGACGAGCTGGTCACCGCGCGGTCGCCCCGGATGGCCGGGGTCCGGTCCGACTACGAGCGCGTGCTGAAGCAG
CGGAACACCCTGCTGAAGTCCGCGGCGATGGCCCGCAGGCACGGCGGCCGCTCCCTCGACCTGTCCACGCTCGACGTGTG
GGACCAGCATCTGGCCGGAGTCGGCGCGGAGCTGCTGGCCCAGCGCCTGGACCTGATCGCCGTGCTCCAGCCCCTGGCCG
ACAAGGCGTACGGGGACGTGGCCCCGGGCGGAGGACCGGTGACGCTGGACTACCGCAGCTCCGTCGGCGCCGAAGCGGGC
CCCGCGCGCACCCGCGAGGAGCTGTACGCGCAGATCATCGAGGCCCTGGCCGGCGTCCGTAAGCAGGAGATCGAACGCGG
AGTGACGCTGGTCGGCCCGCACCGCGACGACCTGGTGCTGGGCCTGCGCTCGATGCCCGCCAAGGGGTACGCGAGCCACG
GCGAGTCCTGGTCGTACGCGCTGGCGCTGCGGCTGGCCTCGTACGAGCTGCTGCGCGGCGAGGGCAACGAACCGGTGCTG
GTGCTGGACGACGTCTTCGCCGAGCTGGACGCGCGCCGCCGGGAGCGGCTGGCGGAGCTGGTGGCGCCGGCCGAGCAGGT
GCTGGTGACCGCCGCCGTGGACGACGATGTGCCCGGAGCGCTCGCGGGGACGCGGTACGCGGTCACCGCCGGCGAGGTGG
AGCGGGTGTGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-352)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

37.705

97.34

0.367