Detailed information NTG0666392

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: MPG33_RS00680
• Genome accession: NZ_CP094070
• Coordinates: 147429..148484 (+)
• Length: 351 a.a.
• NCBI ID: WP_154450108.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe107
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 142429..153484

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG33_RS00650 (MPG33_00650)	-	142851..143264 (+)	414	WP_001023005.1	universal stress protein	-
MPG33_RS00655 (MPG33_00655)	-	143285..143560 (+)	276	WP_245062824.1	ATP-dependent Clp protease adaptor ClpS	-
MPG33_RS00660 (MPG33_00660)	-	143560..145782 (+)	2223	WP_245062826.1	ATP-dependent Clp protease ATP-binding subunit	-
MPG33_RS00665 (MPG33_00665)	panD	145772..146122 (+)	351	WP_180478221.1	aspartate 1-decarboxylase	-
MPG33_RS00670 (MPG33_00670)	-	146133..146426 (+)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
MPG33_RS00675 (MPG33_00675)	-	146426..147421 (+)	996	WP_245063234.1	PDZ domain-containing protein	-
MPG33_RS00680 (MPG33_00680)	comB6	147429..148484 (+)	1056	WP_154450108.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG33_RS00685 (MPG33_00685)	comB7	148500..148625 (+)	126	WP_024117273.1	hypothetical protein	Machinery gene
MPG33_RS00690 (MPG33_00690)	comB8	148622..149365 (+)	744	WP_156584896.1	virB8 family protein	Machinery gene
MPG33_RS00695 (MPG33_00695)	comB9	149365..150336 (+)	972	WP_245062828.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG33_RS00700 (MPG33_00700)	comB10	150329..151465 (+)	1137	WP_245062830.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG33_RS00705 (MPG33_00705)	-	151531..152943 (+)	1413	WP_245062832.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39877.86 Da
• Isoelectric Point: 8.8165

>NTDB_id=666392 MPG33_RS00680 WP_154450108.1 147429..148484(+) (comB6) [Helicobacter pylori strain Hpfe107]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSVSALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPASSPISTSTRESATKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=666392 MPG33_RS00680 WP_154450108.1 147429..148484(+) (comB6) [Helicobacter pylori strain Hpfe107]
ATGAAAAATGACGCTTATGAGATTATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGTTAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCATGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCCGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTGGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGCGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGCTTTTTGAACGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATTAACGCTTTATTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGTGCTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTCCTATTTCTACTTCTACAAGAGAAAGCGCCACTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (43-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	96.581	100	0.966