Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   MPG33_RS00010 Genome accession   NZ_CP094070
Coordinates   1588..3027 (+) Length   479 a.a.
NCBI ID   WP_245062711.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe107     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG33_RS00005 (MPG33_00005) dnaA 1..1368 (+) 1368 WP_075658165.1 chromosomal replication initiator protein DnaA -
  MPG33_RS00010 (MPG33_00010) comH 1588..3027 (+) 1440 WP_245062711.1 competence protein Machinery gene
  MPG33_RS00020 (MPG33_00020) - 3205..3957 (+) 753 WP_075653384.1 exodeoxyribonuclease III -
  MPG33_RS00025 (MPG33_00025) - 3954..4589 (-) 636 WP_245062713.1 outer membrane protein -
  MPG33_RS00030 (MPG33_00030) - 4593..4946 (-) 354 WP_245062716.1 hypothetical protein -
  MPG33_RS00035 (MPG33_00035) recG 5028..6893 (+) 1866 WP_245049054.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 54849.72 Da        Isoelectric Point: 7.4580

>NTDB_id=666390 MPG33_RS00010 WP_245062711.1 1588..3027(+) (comH) [Helicobacter pylori strain Hpfe107]
MKKTLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLNE
KLSLETTLNPNRPTIPRNTQIVFSSKELKEPHSHQMPSLNAPMQKPQNKPTSSQQSLQNFSYTESKLGSKNPKNSLLQPL
ATPNKISSANEVKAPTNDTKPPLKHSSEDQENNLFVAPPTEKTLPNNTPNADTNEHHESNENRDNVEKQAIRDPNIKEFA
CGKWVYDDENLQAYRPSILKRVDEDKQTATDITPCDYSNAENKSGKITTPYTKISVHKTEPLEEPQTFEAKNNFTILQAR
SSTEKCKRARARKDGTTRQCYLIEEPLKQAWESEYQITTQLVKATYERPKQDDQTEPTFYETNELAYSSTRKSEVKQNEL
NLNDKFMEFVEVYEGHYLNDIVKESSEYKEWVKNHVRLKEGVCMVLEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=666390 MPG33_RS00010 WP_245062711.1 1588..3027(+) (comH) [Helicobacter pylori strain Hpfe107]
ATGAAAAAAACCCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCTCTTGTGATCGAGCTTTTAGAAGA
AATCAAAACTTCGCCGCATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAGGCAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACAATCACTCACATATCCACTGCAATTGTCTATCAACCCCTTAATGAA
AAACTTTCTTTAGAAACGACCTTAAACCCTAACCGCCCTACTATTCCCAGAAACACCCAAATTGTTTTTTCTTCAAAAGA
ATTGAAAGAGCCACACTCGCACCAAATGCCTTCTTTAAACGCACCCATGCAAAAACCACAAAACAAACCCACTTCATCGC
AACAATCTCTTCAAAACTTTTCTTACACAGAGTCCAAACTAGGCTCTAAAAACCCTAAAAATAGCCTTTTACAGCCTTTA
GCCACTCCTAATAAAATAAGCTCCGCTAATGAAGTTAAAGCGCCAACAAACGACACTAAACCCCCTTTAAAGCATTCTTC
AGAAGATCAAGAAAACAACCTCTTTGTAGCACCACCCACTGAAAAAACACTCCCTAACAACACCCCTAACGCTGATACTA
ATGAACACCATGAAAGCAATGAAAATAGGGATAATGTGGAAAAACAAGCGATTAGAGATCCTAATATCAAAGAATTTGCG
TGCGGGAAGTGGGTCTATGATGATGAAAATTTACAAGCCTATCGCCCAAGCATTTTAAAACGCGTTGATGAAGACAAACA
GACTGCGACAGACATTACCCCTTGCGATTACAGCAACGCTGAAAATAAAAGCGGTAAAATCACTACCCCCTATACTAAAA
TCTCTGTTCATAAAACAGAGCCTTTAGAAGAGCCGCAAACTTTTGAAGCTAAAAACAATTTTACCATCCTCCAAGCCAGA
AGCTCTACAGAAAAATGCAAAAGGGCCAGAGCGCGAAAAGACGGCACGACCAGGCAATGCTATCTCATAGAAGAGCCTTT
AAAACAAGCGTGGGAGAGCGAGTATCAAATCACCACGCAATTAGTGAAAGCCACTTATGAGCGCCCCAAACAAGACGATC
AAACAGAGCCGACTTTCTATGAAACCAACGAATTGGCTTATTCTTCCACACGAAAGAGTGAAGTTAAGCAAAATGAATTG
AATTTGAATGATAAGTTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAGTCAAAGAAAGCAGTGA
ATACAAAGAATGGGTTAAAAACCATGTGCGTTTAAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAGCAACCACGAG
CCAAAAGCACGCCCTTGAGCATTGAAAACTCTCGTGTTGTTTGCGTTAAAAAAGGGAATTATTTATTCAACGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

91.232

100

0.912