Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPG11_RS07035 Genome accession   NZ_CP094067
Coordinates   1453328..1454641 (-) Length   437 a.a.
NCBI ID   WP_245052476.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe108     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1448328..1459641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG11_RS07005 (MPG11_07005) nadC 1448791..1449612 (-) 822 WP_245052474.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPG11_RS07010 (MPG11_07010) nadA 1449612..1450622 (-) 1011 WP_245049176.1 quinolinate synthase NadA -
  MPG11_RS07015 (MPG11_07015) - 1450612..1451415 (-) 804 WP_245049178.1 phosphatidylserine decarboxylase -
  MPG11_RS07020 (MPG11_07020) - 1451412..1451915 (-) 504 WP_000953083.1 hypothetical protein -
  MPG11_RS07025 (MPG11_07025) - 1451928..1452422 (-) 495 WP_017281584.1 hypothetical protein -
  MPG11_RS07030 (MPG11_07030) mqnP 1452415..1453299 (-) 885 WP_180615106.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPG11_RS07035 (MPG11_07035) comEC/comE3 1453328..1454641 (-) 1314 WP_245052476.1 ComEC/Rec2 family competence protein Machinery gene
  MPG11_RS07040 (MPG11_07040) - 1454638..1456104 (-) 1467 WP_245052478.1 replicative DNA helicase -
  MPG11_RS07045 (MPG11_07045) - 1456115..1457509 (-) 1395 WP_245052479.1 NAD(P)H-hydrate dehydratase -
  MPG11_RS07050 (MPG11_07050) crdS 1457512..1458714 (-) 1203 WP_245053187.1 copper-sensing histidine kinase CrdS -
  MPG11_RS07055 (MPG11_07055) crdR 1458680..1459321 (-) 642 WP_017280897.1 copper response regulator transcription factor CrdR -
  MPG11_RS07060 (MPG11_07060) - 1459404..1459631 (-) 228 Protein_1375 restriction endonuclease subunit R -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50098.10 Da        Isoelectric Point: 9.8515

>NTDB_id=666385 MPG11_RS07035 WP_245052476.1 1453328..1454641(-) (comEC/comE3) [Helicobacter pylori strain Hpfe108]
MKDKTFQGAFELLTTPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTNLNAQILLQYPKTKDQKTYFVLKFQSKGMI
FYSTIKEPLKNLQYRHAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHVRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILVCCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHAQAFFKTSSFLVRSFQVISLS
VLVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLLLHAVGLGSLLDSILNMPLMIPTISVFSPLWLLGVHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSSIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=666385 MPG11_RS07035 WP_245052476.1 1453328..1454641(-) (comEC/comE3) [Helicobacter pylori strain Hpfe108]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGCTTAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAACCTGAACG
CTCAAATCTTGTTGCAATACCCCAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGTTCCAATCAAAGGGCATGATC
TTTTATTCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCATGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
ATTTTTGGAGTCTCTAAAGTCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACGCGAAAACAAGATTTCAAATCGCATG
TGCGCCATTTCATTGATAGCGCTCATTCAAGCGCTTTAGTGGGCAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCATTTACTAGCCATTAGTGGGTTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTATGGGTTTTTTTACTAGGGTATTTATTGCTATTGGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAGCTTTTGATTTTAGTGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACGCTCAAGCCTTTTTTAAAACTTCTTCTTTTTTGGTGCGATCTTTTCAAGTCATAAGCTTAAGC
GTGCTAGTGTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTACTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATAGCA
TTTTAAACATGCCTTTAATGATCCCTACGATTTCGGTTTTTTCGCCTTTATGGCTTTTAGGGGTGCATTTATTTTTAACG
ATTCTAAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTCAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

93.822

100

0.938