Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPG11_RS05575 Genome accession   NZ_CP094067
Coordinates   1162902..1163306 (-) Length   134 a.a.
NCBI ID   WP_245052241.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe108     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1157902..1168306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG11_RS05535 (MPG11_05535) - 1157995..1159080 (-) 1086 WP_245052234.1 hypothetical protein -
  MPG11_RS05540 (MPG11_05540) - 1159070..1159855 (-) 786 WP_245052235.1 hypothetical protein -
  MPG11_RS05545 (MPG11_05545) - 1159855..1160236 (-) 382 Protein_1074 DUF1294 domain-containing protein -
  MPG11_RS05550 (MPG11_05550) - 1160563..1160724 (-) 162 WP_017283988.1 hypothetical protein -
  MPG11_RS05555 (MPG11_05555) - 1160773..1161204 (-) 432 WP_245052237.1 glycoside hydrolase family protein -
  MPG11_RS05560 (MPG11_05560) - 1161254..1161814 (-) 561 WP_245048892.1 hypothetical protein -
  MPG11_RS05565 (MPG11_05565) - 1161798..1162136 (-) 339 WP_187852348.1 hypothetical protein -
  MPG11_RS05570 (MPG11_05570) - 1162323..1162778 (-) 456 WP_245052239.1 tetratricopeptide repeat protein -
  MPG11_RS05575 (MPG11_05575) dprB 1162902..1163306 (-) 405 WP_245052241.1 Holliday junction resolvase RuvX Machinery gene
  MPG11_RS05580 (MPG11_05580) dprA 1163303..1164103 (-) 801 WP_245052243.1 DNA-processing protein DprA Machinery gene
  MPG11_RS05585 (MPG11_05585) minE 1164115..1164348 (-) 234 WP_000051412.1 cell division topological specificity factor MinE -
  MPG11_RS05590 (MPG11_05590) minD 1164345..1165151 (-) 807 WP_121048622.1 septum site-determining protein MinD -
  MPG11_RS05595 (MPG11_05595) ilvC 1165170..1166162 (-) 993 WP_245052245.1 ketol-acid reductoisomerase -
  MPG11_RS05605 (MPG11_05605) - 1166410..1167192 (+) 783 WP_245052246.1 NAD+ synthase -
  MPG11_RS05610 (MPG11_05610) - 1167189..1168127 (+) 939 WP_245052248.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15302.82 Da        Isoelectric Point: 8.7023

>NTDB_id=666381 MPG11_RS05575 WP_245052241.1 1162902..1163306(-) (dprB) [Helicobacter pylori strain Hpfe108]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADMNARIEYFIKLLDFKGE
IVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKNH

Nucleotide


Download         Length: 405 bp        

>NTDB_id=666381 MPG11_RS05575 WP_245052241.1 1162902..1163306(-) (dprB) [Helicobacter pylori strain Hpfe108]
GTGATTTTGGCATGCGATGTGGGGCTGAAGCGTATTGGGATCGCTGCGCTTTTAAACGGCGTTATTTTGCCCTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACATGAACGCGCGCATTGAATATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCTAGTATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTAAAAAATC
ATTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

96.269

100

0.963