Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPG46_RS07440 Genome accession   NZ_CP094066
Coordinates   1534729..1536042 (-) Length   437 a.a.
NCBI ID   WP_245014314.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe110     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1529729..1541042
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG46_RS07410 (MPG46_07410) nadC 1530192..1531013 (-) 822 WP_245014309.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPG46_RS07415 (MPG46_07415) nadA 1531013..1532023 (-) 1011 WP_245014310.1 quinolinate synthase NadA -
  MPG46_RS07420 (MPG46_07420) - 1532010..1532816 (-) 807 WP_245014311.1 phosphatidylserine decarboxylase -
  MPG46_RS07425 (MPG46_07425) - 1532813..1533316 (-) 504 WP_245014312.1 helix-turn-helix domain-containing protein -
  MPG46_RS07430 (MPG46_07430) - 1533329..1533823 (-) 495 WP_245014313.1 hypothetical protein -
  MPG46_RS07435 (MPG46_07435) mqnP 1533816..1534700 (-) 885 WP_180580891.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPG46_RS07440 (MPG46_07440) comEC/comE3 1534729..1536042 (-) 1314 WP_245014314.1 ComEC/Rec2 family competence protein Machinery gene
  MPG46_RS07445 (MPG46_07445) - 1536039..1537499 (-) 1461 WP_245014315.1 replicative DNA helicase -
  MPG46_RS07450 (MPG46_07450) - 1537510..1538904 (-) 1395 WP_245014316.1 NAD(P)H-hydrate dehydratase -
  MPG46_RS07455 (MPG46_07455) crdS 1538907..1540109 (-) 1203 WP_245014837.1 copper-sensing histidine kinase CrdS -
  MPG46_RS07460 (MPG46_07460) crdR 1540075..1540716 (-) 642 WP_075711046.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50012.08 Da        Isoelectric Point: 9.8537

>NTDB_id=666363 MPG46_RS07440 WP_245014314.1 1534729..1536042(-) (comEC/comE3) [Helicobacter pylori strain Hpfe110]
MKDKTFQGAFELLATPKECLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRYAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHVRRFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLVRSFQVISLS
MLVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLLLHAVGLGSLLDSILNMPLMIPTIFVSSPLWLLGAHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSSIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=666363 MPG46_RS07440 WP_245014314.1 1534729..1536042(-) (comEC/comE3) [Helicobacter pylori strain Hpfe110]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTGCAACCCCCAAAGAATGCTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGCTTAATCTTTATTTAGAATATTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTGTTAAAGCTCCAATCAAAGGGCATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTACGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTTTTGGAGTCTTTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACGCGAAAACAAGATTTCAAATCGCATG
TGCGCCGTTTCATTGACAGCGCTCATTCAAGTGCTTTAGTGGGCAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGGGATAGGGCTAATGCGTTAGGGATCAACCACTTACTGGCCATTAGCGGGTTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTGGATTTTTTACCTTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAGCACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGTGCGATCTTTTCAGGTCATAAGCTTAAGC
ATGCTAGTGTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTACTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATAGTA
TTTTAAACATGCCTTTAATGATCCCTACGATTTTTGTTTCTTCGCCTTTATGGCTTTTAGGGGCGCATTTATTTTTAACG
ATTTTGAGTGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTCAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

93.593

100

0.936