Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPG46_RS05880 Genome accession   NZ_CP094066
Coordinates   1214963..1215367 (-) Length   134 a.a.
NCBI ID   WP_245014140.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe110     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1209963..1220367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG46_RS05830 (MPG46_05830) - 1210208..1211343 (-) 1136 Protein_1137 hypothetical protein -
  MPG46_RS05835 (MPG46_05835) - 1211333..1212118 (-) 786 WP_245014136.1 hypothetical protein -
  MPG46_RS05840 (MPG46_05840) - 1212118..1212504 (-) 387 WP_245014826.1 DUF1294 domain-containing protein -
  MPG46_RS05845 (MPG46_05845) - 1212650..1212787 (-) 138 WP_245014845.1 hypothetical protein -
  MPG46_RS08170 - 1212836..1213103 (-) 268 Protein_1141 lysozyme -
  MPG46_RS05860 (MPG46_05860) - 1213312..1213494 (-) 183 WP_245014138.1 lysozyme -
  MPG46_RS05865 (MPG46_05865) - 1213505..1214065 (-) 561 WP_199498750.1 hypothetical protein -
  MPG46_RS05870 (MPG46_05870) - 1214049..1214387 (-) 339 WP_000699916.1 hypothetical protein -
  MPG46_RS05875 (MPG46_05875) - 1214654..1214905 (-) 252 WP_245014139.1 tetratricopeptide repeat protein -
  MPG46_RS05880 (MPG46_05880) dprB 1214963..1215367 (-) 405 WP_245014140.1 Holliday junction resolvase RuvX Machinery gene
  MPG46_RS05885 (MPG46_05885) dprA 1215364..1216164 (-) 801 WP_245014141.1 DNA-processing protein DprA Machinery gene
  MPG46_RS05890 (MPG46_05890) minE 1216176..1216409 (-) 234 WP_245014142.1 cell division topological specificity factor MinE -
  MPG46_RS05895 (MPG46_05895) minD 1216406..1217212 (-) 807 WP_245014143.1 septum site-determining protein MinD -
  MPG46_RS05900 (MPG46_05900) ilvC 1217236..1218228 (-) 993 WP_245014144.1 ketol-acid reductoisomerase -
  MPG46_RS05910 (MPG46_05910) - 1218477..1219259 (+) 783 WP_245014145.1 NAD+ synthase -
  MPG46_RS05915 (MPG46_05915) - 1219256..1220194 (+) 939 WP_245014146.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15331.80 Da        Isoelectric Point: 8.7022

>NTDB_id=666359 MPG46_RS05880 WP_245014140.1 1214963..1215367(-) (dprB) [Helicobacter pylori strain Hpfe110]
MILACDVGLKRIGIATLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEYFIKLLDFKGE
IVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYCQHVLKDR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=666359 MPG46_RS05880 WP_245014140.1 1214963..1215367(-) (dprB) [Helicobacter pylori strain Hpfe110]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTACGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTGCGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGAGAAAAAAACATTCAGGTGCTGGTGG
TGGGTAAGCCCAATGAAAGCTATGCGGACACGAATGCGCGCATTGAATATTTCATCAAACTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGTCGGCTAGACTCTTTGAGCGCTTGTAGGATCTTGGAGCGCTATTGCCAGCATGTTTTGAAAGATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

95.489

99.254

0.948