Detailed information NTG0666352

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: MPG46_RS03065
• Genome accession: NZ_CP094066
• Coordinates: 635846..637048 (-)
• Length: 400 a.a.
• NCBI ID: WP_245014675.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe110
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 630846..642048

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG46_RS03040 (MPG46_03040)	-	630860..631378 (-)	519	WP_033588775.1	hypothetical protein	-
MPG46_RS03045 (MPG46_03045)	-	631375..632319 (-)	945	WP_245014671.1	CpaF/VirB11 family protein	-
MPG46_RS03050 (MPG46_03050)	-	632324..632596 (-)	273	WP_245014672.1	hypothetical protein	-
MPG46_RS03055 (MPG46_03055)	-	632614..633591 (-)	978	WP_245014673.1	hypothetical protein	-
MPG46_RS03060 (MPG46_03060)	-	633604..635862 (-)	2259	WP_245014674.1	collagen-like protein	-
MPG46_RS03065 (MPG46_03065)	comB10	635846..637048 (-)	1203	WP_245014675.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG46_RS03070 (MPG46_03070)	-	637045..638694 (-)	1650	WP_245014676.1	TrbG/VirB9 family P-type conjugative transfer protein	-
MPG46_RS03075 (MPG46_03075)	-	638704..639084 (-)	381	Protein_590	VirB8/TrbF family protein	-
MPG46_RS03080 (MPG46_03080)	-	639135..640394 (-)	1260	WP_245013955.1	transposase	-
MPG46_RS03085 (MPG46_03085)	-	640369..641022 (-)	654	WP_154506233.1	IS607-like element IS607 family transposase	-
MPG46_RS03090 (MPG46_03090)	-	641109..641885 (-)	777	Protein_593	VirB8/TrbF family protein	-
MPG46_RS03095 (MPG46_03095)	-	641878..642012 (-)	135	WP_033586494.1	hypothetical protein	-

Sequence

Protein

• Length: 400 a.a.
• Molecular weight: 44820.65 Da
• Isoelectric Point: 10.0711

>NTDB_id=666352 MPG46_RS03065 WP_245014675.1 635846..637048(-) (comB10) [Helicobacter pylori strain Hpfe110]
MKQSLLKKIGLGVGGFVVLMALGLLANKGSNNNNKEEIYSIEESKFPLSDYFFEEVKEEPKKEENPKIITTPQPTAPTTA
NVSTNPIITDYSHLNSNLNKQNDTITHLQQVLQSPPKMKPKLKHTKEQLEFLNTRLKPLEPTKPATKPETEYGVDSFTNL
KYKDIGTNEHKLLRTITADRMIPAFLITPISSQIAGKVTAQVESDIFASMGRAVLIPKGSKVIGYYNNNNQIGQYRLNIA
WTRIITPQGINIMLTNARGADVKGYNGLVGKYISRNFQRYGIPLLTNTLSNGLLIGITSALANRQNRKGDGNPFFGDYLL
MQLTRNTGMGINQVINQMLRQYGAQNPIIIIREGSRVFISPNLDIFIPKPKDGEVLAEFFKEKKPLIKKSKEEINNEEEI

Nucleotide

• Length: 1203 bp

>NTDB_id=666352 MPG46_RS03065 WP_245014675.1 635846..637048(-) (comB10) [Helicobacter pylori strain Hpfe110]
ATGAAACAATCCTTGCTTAAAAAGATAGGCTTAGGTGTTGGGGGCTTTGTTGTTTTAATGGCATTAGGATTGCTTGCTAA
TAAAGGTTCAAACAATAACAATAAAGAAGAAATTTACAGCATAGAAGAAAGTAAATTCCCCTTAAGCGATTATTTCTTTG
AAGAAGTCAAAGAAGAACCAAAAAAAGAAGAAAACCCCAAAATAATAACTACGCCACAACCTACAGCTCCAACTACTGCC
AATGTTTCAACTAATCCTATCATTACAGATTATAGTCATCTTAACAGCAATCTCAACAAGCAAAATGACACCATCACGCA
TTTGCAACAAGTTTTACAAAGCCCCCCTAAAATGAAACCTAAATTAAAGCATACTAAAGAGCAATTAGAATTTTTAAACA
CACGCCTTAAACCTTTAGAACCAACTAAACCAGCCACTAAGCCTGAGACGGAATACGGCGTGGATAGTTTTACTAATTTA
AAATATAAAGACATCGGCACTAATGAGCATAAGCTATTAAGAACTATAACCGCTGATAGAATGATACCAGCCTTTTTAAT
CACGCCTATTAGCTCTCAAATTGCTGGAAAAGTAACCGCCCAAGTAGAGAGCGATATATTTGCTTCTATGGGTAGAGCGG
TGCTAATCCCTAAAGGCTCTAAGGTTATAGGCTATTACAATAATAACAATCAAATCGGGCAATACCGCCTTAACATTGCT
TGGACTAGAATTATCACGCCTCAAGGCATAAACATCATGCTCACTAACGCAAGGGGGGCTGATGTGAAGGGTTATAATGG
CTTAGTAGGCAAATACATTAGCCGAAACTTTCAACGCTATGGTATCCCCTTACTCACTAACACGCTCTCTAATGGTCTTT
TAATAGGAATTACTTCAGCCTTAGCTAATAGGCAAAATAGAAAGGGTGATGGCAACCCTTTTTTTGGGGATTACTTGCTT
ATGCAACTCACTAGAAATACAGGCATGGGCATCAATCAAGTTATCAATCAAATGCTAAGGCAATATGGAGCGCAAAACCC
CATTATCATCATTAGAGAGGGGAGCAGAGTGTTTATTAGCCCTAATTTAGACATCTTTATCCCTAAACCAAAAGATGGGG
AGGTTTTAGCGGAGTTCTTTAAAGAGAAAAAACCACTAATCAAAAAATCAAAAGAGGAAATTAACAATGAAGAAGAAATC
TAA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (175-365)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	53.69	98.25	0.528