Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG221_RS29945 Genome accession   NZ_CP108765
Coordinates   6737363..6738358 (-) Length   331 a.a.
NCBI ID   WP_405944861.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00932     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 6732363..6743358
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG221_RS29935 (OG221_29925) - 6733412..6734656 (-) 1245 WP_405944859.1 hypothetical protein -
  OG221_RS29940 (OG221_29930) - 6735395..6737344 (-) 1950 WP_405944860.1 cellulase family glycosylhydrolase -
  OG221_RS29945 (OG221_29935) cytR 6737363..6738358 (-) 996 WP_405944861.1 LacI family DNA-binding transcriptional regulator Regulator
  OG221_RS29950 (OG221_29940) - 6738355..6739182 (-) 828 WP_405944862.1 carbohydrate ABC transporter permease -
  OG221_RS29955 (OG221_29945) - 6739207..6740133 (-) 927 WP_328376446.1 sugar ABC transporter permease -
  OG221_RS29960 (OG221_29950) - 6740146..6741438 (-) 1293 WP_401600473.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 331 a.a.        Molecular weight: 34971.74 Da        Isoelectric Point: 7.2649

>NTDB_id=666345 OG221_RS29945 WP_405944861.1 6737363..6738358(-) (cytR) [Streptomyces sp. NBC_00932]
MSPAPAAGSRPTIKDVAAQAGVSTAAVSKVFNNTGRISEPTRRRVLETAGRLGWSPSASASALRRARTHTVAMVVRRPTD
VLGTDLHFSELITGLESELSPRGYGLLLHLTGDVREETALYERLAAEGRVDGAVLTEHRADDPRPPLLERLGLPAVLLGT
AHSSGVSEAVRHLLDLGHRRIAYVTGPTGLLHTRFRQRVFEETLAGAGLAPVAVLHTDFTEAAATSATEQLLALDPRPTA
IVFANDSMAVCGIGTAQRAGLSVPAELSVVGYDNLPVGSWIHPRLTTVDQYVQRAGAAAARALLAQCGEDVPPEPLTGQP
RLVVRESTGPV

Nucleotide


Download         Length: 996 bp        

>NTDB_id=666345 OG221_RS29945 WP_405944861.1 6737363..6738358(-) (cytR) [Streptomyces sp. NBC_00932]
GTGAGCCCGGCTCCGGCGGCCGGCTCCCGGCCCACGATCAAGGACGTCGCCGCGCAGGCCGGGGTCTCCACGGCGGCCGT
GTCCAAGGTCTTCAACAACACCGGCCGGATCTCCGAGCCGACCCGGCGCCGCGTCCTGGAGACGGCCGGGCGGCTCGGCT
GGTCGCCGAGCGCGTCGGCGAGCGCGCTGCGCAGGGCCCGTACGCACACGGTCGCGATGGTCGTACGCCGCCCCACCGAC
GTTCTCGGCACCGACCTGCACTTCTCCGAGCTGATCACCGGGCTGGAGAGCGAGCTGTCGCCGCGCGGGTACGGGCTGCT
GCTGCATCTGACCGGCGATGTGCGCGAGGAGACCGCGCTGTACGAACGCCTCGCCGCCGAGGGCCGGGTCGACGGGGCCG
TGCTGACCGAGCACCGGGCCGACGACCCGCGCCCGCCGCTGCTCGAACGGCTCGGGCTGCCCGCGGTGCTGCTGGGCACG
GCGCACAGCAGCGGAGTCAGCGAGGCGGTCCGCCATCTGCTGGATCTGGGACACCGGCGCATCGCCTATGTGACCGGGCC
GACGGGGCTGCTCCACACGCGCTTCCGGCAGCGGGTCTTCGAGGAGACCCTGGCCGGGGCGGGCCTGGCCCCGGTCGCGG
TGCTCCACACGGACTTCACCGAGGCGGCGGCCACTTCCGCCACCGAGCAGCTGCTCGCCCTCGACCCGCGGCCCACCGCC
ATCGTCTTCGCCAACGACTCGATGGCGGTCTGCGGCATCGGCACGGCGCAGCGCGCGGGGCTCTCCGTGCCCGCGGAACT
GTCCGTCGTCGGCTATGACAACCTGCCGGTCGGCAGCTGGATCCACCCCCGGCTGACCACGGTCGACCAGTACGTCCAGC
GGGCCGGCGCGGCTGCCGCCCGGGCACTGCTCGCGCAGTGCGGCGAGGACGTACCCCCTGAACCCCTCACCGGACAACCC
CGGCTCGTCGTACGCGAGTCGACCGGTCCCGTCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(12-57)

Periplasmic binding protein-like domain (Peripla_BP_3)

(170-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

35.905

100

0.366