Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPF94_RS07225 Genome accession   NZ_CP094065
Coordinates   1493088..1494401 (+) Length   437 a.a.
NCBI ID   WP_245022043.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe112     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1488088..1499401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF94_RS07205 (MPF94_07205) crdR 1488408..1489049 (+) 642 WP_245022040.1 copper response regulator transcription factor CrdR -
  MPF94_RS07210 (MPF94_07210) crdS 1489015..1490217 (+) 1203 WP_245022572.1 copper-sensing histidine kinase CrdS -
  MPF94_RS07215 (MPF94_07215) - 1490220..1491614 (+) 1395 WP_245022041.1 NAD(P)H-hydrate dehydratase -
  MPF94_RS07220 (MPF94_07220) - 1491625..1493091 (+) 1467 WP_245022042.1 replicative DNA helicase -
  MPF94_RS07225 (MPF94_07225) comEC/comE3 1493088..1494401 (+) 1314 WP_245022043.1 ComEC/Rec2 family competence protein Machinery gene
  MPF94_RS07230 (MPF94_07230) mqnP 1494472..1495314 (+) 843 WP_245022044.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPF94_RS07235 (MPF94_07235) - 1495307..1495801 (+) 495 WP_245022045.1 hypothetical protein -
  MPF94_RS07240 (MPF94_07240) - 1495814..1496317 (+) 504 WP_000953102.1 hypothetical protein -
  MPF94_RS07245 (MPF94_07245) - 1496314..1497120 (+) 807 WP_245022046.1 phosphatidylserine decarboxylase -
  MPF94_RS07250 (MPF94_07250) nadA 1497107..1498117 (+) 1011 WP_245022047.1 quinolinate synthase NadA -
  MPF94_RS07255 (MPF94_07255) nadC 1498117..1498938 (+) 822 WP_245022048.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50080.13 Da        Isoelectric Point: 9.9068

>NTDB_id=666343 MPF94_RS07225 WP_245022043.1 1493088..1494401(+) (comEC/comE3) [Helicobacter pylori strain Hpfe112]
MKDKTFQGAFELLTTPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYATIKEPLKNLQYRHAQFFGKIKSCSFLESLKSCFFQTYSFSLTRKQDFKSHVRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLVRSFQVISLS
ALVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLLLHAVGLGSLLDRILNMPLMIPTISVFSPLWLLGVHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=666343 MPF94_RS07225 WP_245022043.1 1493088..1494401(+) (comEC/comE3) [Helicobacter pylori strain Hpfe112]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGCTCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCCAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCACGCGCAATTTTTTGGCAAAATCAAATCTTGCTC
GTTCTTAGAGTCTCTAAAATCATGCTTTTTTCAAACCTATTCGTTTTCTTTAACACGAAAACAAGATTTCAAATCGCATG
TGCGCCATTTCATTGACAGCGCTCATTCAAGCGCTTTAGTGGGTAATTTGTATCGCGCGTTATTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGACAGGGCTAACGCGCTAGGGATCAACCACTTATTAGCCATTAGCGGGTTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAGCTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTACTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACTTCTTCTTTTTTGGTGCGATCTTTTCAGGTCATAAGCTTAAGC
GCGCTAGTGTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTACTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATCGTA
TTTTAAATATGCCTTTAATGATCCCTACGATTTCGGTTTTTTCGCCTTTATGGCTTTTGGGGGTGCATTTATTTTTAACG
ATTCTAAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTGAGTGCAGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

95.195

100

0.952