Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG221_RS22985 Genome accession   NZ_CP108765
Coordinates   5175308..5176288 (+) Length   326 a.a.
NCBI ID   WP_266856000.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00932     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 5170308..5181288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG221_RS22960 (OG221_22960) - 5170418..5171056 (+) 639 WP_266855992.1 TetR/AcrR family transcriptional regulator -
  OG221_RS22965 (OG221_22965) - 5171406..5172935 (+) 1530 WP_266855993.1 MFS transporter -
  OG221_RS22970 (OG221_22970) - 5173062..5173577 (-) 516 WP_266855995.1 MarR family winged helix-turn-helix transcriptional regulator -
  OG221_RS22975 (OG221_22975) - 5173669..5174448 (+) 780 WP_405944456.1 dioxygenase -
  OG221_RS22980 (OG221_22980) - 5174597..5175124 (-) 528 WP_266855999.1 GNAT family N-acetyltransferase -
  OG221_RS22985 (OG221_22985) rpoS 5175308..5176288 (+) 981 WP_266856000.1 RNA polymerase sigma factor RpoD/SigA Regulator
  OG221_RS22990 (OG221_22990) - 5176437..5177964 (-) 1528 Protein_4549 MFS transporter -
  OG221_RS22995 (OG221_22995) - 5178240..5179223 (+) 984 WP_405944457.1 helix-turn-helix transcriptional regulator -
  OG221_RS23000 (OG221_23000) - 5179449..5180195 (-) 747 WP_405912510.1 DUF6227 family protein -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 36494.17 Da        Isoelectric Point: 4.9566

>NTDB_id=666332 OG221_RS22985 WP_266856000.1 5175308..5176288(+) (rpoS) [Streptomyces sp. NBC_00932]
MATRAVARRSDRASSVRAVGGEIADRDLVGMYLDEIARTPLLDAEKEVELSQTIEAGVYAQQVLDGSVQSEAGGASREEL
EALVAAGERAKDVFIRSNLRLVVAVARRYPRAGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQAITRSIAD
QSRTIRLPVHLVEELGRIRRVQREFNREHGRDPEHEEIAAELDAKPQRVSDVLDWARDPVSLNMPVDDQGETQFGDLLED
TSAVSPEQSVMTLLRSEELDELIGRLDHRTASIIKMRFGIDDGRERTLTEVGKEHGLTRERIRQIEKHALLELKKMADDV
GFDAAA

Nucleotide


Download         Length: 981 bp        

>NTDB_id=666332 OG221_RS22985 WP_266856000.1 5175308..5176288(+) (rpoS) [Streptomyces sp. NBC_00932]
ATGGCAACCCGTGCCGTCGCCCGTCGATCCGACCGGGCAAGCAGCGTTCGCGCCGTAGGCGGGGAGATCGCCGACCGCGA
CCTGGTCGGCATGTACCTCGACGAAATCGCACGTACGCCACTGCTCGACGCCGAAAAAGAGGTCGAGCTGTCCCAGACCA
TCGAGGCCGGGGTGTACGCCCAGCAGGTTCTTGACGGTTCCGTGCAGAGCGAGGCGGGTGGGGCCTCGCGTGAGGAGCTG
GAGGCGCTGGTTGCCGCCGGGGAGCGCGCCAAGGACGTCTTCATCCGGTCCAACCTGCGGCTGGTCGTCGCTGTGGCCCG
CCGCTATCCGCGAGCCGGTCTGCCGCTGCTCGACCTGATCCAGGAGGGCAACGCGGGTCTGGTGCGCGCGGTCGAGAAGT
TCGACTACGCCAAGGGCTTCAAGTTCTCCACGTATGCGACCTGGTGGATCCGGCAGGCCATCACCCGGTCGATAGCCGAT
CAGTCGCGCACCATCCGGCTCCCTGTCCACCTGGTGGAGGAGCTGGGACGGATCCGCCGTGTCCAGCGCGAGTTCAACCG
CGAGCACGGCCGCGACCCGGAGCACGAGGAGATCGCCGCCGAGCTGGACGCCAAGCCGCAGCGTGTGAGCGATGTGCTGG
ACTGGGCCCGCGACCCGGTCAGTCTGAACATGCCGGTGGACGACCAGGGCGAGACGCAGTTCGGTGACCTCCTGGAGGAC
ACGTCGGCGGTGTCGCCCGAGCAGTCCGTGATGACGCTGCTGCGCAGCGAGGAGCTCGACGAACTGATCGGCAGGCTCGA
TCACCGCACCGCTTCGATCATCAAGATGCGCTTCGGTATCGACGACGGCCGGGAGCGGACGCTGACCGAGGTCGGCAAGG
AGCACGGGCTGACACGTGAGCGGATCCGTCAGATCGAGAAGCACGCGCTGCTCGAACTGAAGAAGATGGCCGACGACGTG
GGCTTCGACGCGGCGGCGTGA

Domains

Predicted by InterProScan.

Sigma-70 region 2 (Sigma70_r2)

(94-163)

Sigma-70, region 4 (Sigma70_r4)

(263-315)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(27-60)

Sigma-70 region 3 (Sigma70_r3)

(173-249)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40.333

92.025

0.371