Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   MPF94_RS00010 Genome accession   NZ_CP094065
Coordinates   1590..3023 (+) Length   477 a.a.
NCBI ID   WP_245022121.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe112     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF94_RS00005 (MPF94_00005) dnaA 1..1368 (+) 1368 WP_245022120.1 chromosomal replication initiator protein DnaA -
  MPF94_RS00010 (MPF94_00010) comH 1590..3023 (+) 1434 WP_245022121.1 competence protein Machinery gene
  MPF94_RS00020 (MPF94_00020) - 3200..3952 (+) 753 WP_000767554.1 exodeoxyribonuclease III -
  MPF94_RS00025 (MPF94_00025) - 3949..4584 (-) 636 WP_000668030.1 outer membrane protein -
  MPF94_RS00030 (MPF94_00030) - 4588..4941 (-) 354 WP_220828211.1 hypothetical protein -
  MPF94_RS00035 (MPF94_00035) recG 5023..6888 (+) 1866 WP_245022122.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54772.69 Da        Isoelectric Point: 6.9580

>NTDB_id=666323 MPF94_RS00010 WP_245022121.1 1590..3023(+) (comH) [Helicobacter pylori strain Hpfe112]
MKKTLYLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETILNPNRPTIPRNTQIVFSSKELKEPHQMPSLNAPIQKPQNKPTSSQQSLQNFSYTESKLGSKNPKNSLLQPLAT
PNKISSTNEVKTPTNDTKPPLRHSSEDQENNLFIAPPTEKTLPNNTPNANINEHDESNENRDNGEKQAIRDPNIKEFACG
KWVYDDENLQAYRPSILKRIDEDKQTATDITPCDYSNAENKSGKITTPYTKISVHKTEPLEEPQTFEAKNNFTILQARSS
TEKCKRARARKDGTTRQCYLIEEPLKQAWESEYEITTQLVKAVYERPKQDDQTELTFYETNELAYSSTRKSEVKQNELNL
NEKFMEFVEVYEGHYLNDIVKESSEYKEWVKNHVRLKEGVCMVLEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=666323 MPF94_RS00010 WP_245022121.1 1590..3023(+) (comH) [Helicobacter pylori strain Hpfe112]
ATGAAAAAAACCCTTTATCTGTCTTTCTTTCTAACTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGA
AATCAAAACCTCGCCGCATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAACATCTCCCCACACAAAAAACTCACGCTCACAATCACTCACATATCCACTGCAATTGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGATCTTAAACCCTAACCGCCCTACTATTCCCAGGAACACCCAGATTGTTTTTTCTTCAAAAGA
ATTGAAAGAGCCGCACCAAATGCCTTCTTTAAACGCGCCCATACAAAAACCACAAAACAAACCCACTTCATCGCAACAAT
CTCTTCAAAACTTTTCTTACACAGAGTCCAAACTAGGCTCTAAAAACCCTAAAAACAGCCTTTTACAGCCTTTAGCCACT
CCTAATAAAATAAGCTCCACTAATGAAGTTAAAACGCCAACAAACGACACTAAACCCCCTTTAAGGCATTCTTCAGAAGA
TCAAGAAAACAACCTTTTCATAGCACCACCCACTGAAAAAACGCTCCCTAACAACACCCCTAACGCTAATATTAATGAAC
ACGATGAAAGCAATGAAAATAGGGATAATGGGGAAAAACAAGCCATTAGAGATCCTAATATCAAAGAATTTGCATGCGGG
AAGTGGGTCTATGATGATGAAAATTTACAAGCCTATCGCCCAAGCATTTTAAAACGCATTGATGAAGACAAACAGACTGC
GACAGACATTACCCCTTGCGACTACAGCAACGCTGAAAATAAAAGCGGTAAAATCACTACCCCCTATACTAAAATCTCTG
TTCATAAAACAGAGCCTTTAGAAGAGCCACAAACCTTTGAAGCTAAAAACAATTTTACCATTCTCCAAGCCAGAAGCTCT
ACAGAAAAATGTAAAAGGGCCAGAGCGCGAAAAGACGGCACGACCAGGCAATGCTATCTCATAGAAGAGCCTTTAAAACA
AGCGTGGGAGAGTGAGTATGAAATCACCACGCAATTAGTGAAAGCTGTATATGAGCGCCCCAAACAAGACGATCAAACAG
AGCTGACTTTCTATGAAACCAACGAATTGGCTTATTCTTCCACACGAAAGAGTGAAGTTAAGCAAAATGAATTGAATTTG
AATGAAAAGTTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAGTCAAAGAAAGCAGTGAATACAA
AGAATGGGTTAAAAACCATGTGCGTTTAAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAACAACCACGAGCCAAAA
GCACGCCTTTGAGCATTGAAAACTCTCGTGTTGTTTGTGTCAAAAAGGGGAATTATTTATTCAACGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

91.023

100

0.914