Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPG37_RS06940 Genome accession   NZ_CP094064
Coordinates   1433375..1434688 (-) Length   437 a.a.
NCBI ID   WP_245050927.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe114     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1428375..1439688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG37_RS06910 (MPG37_06910) nadC 1428838..1429659 (-) 822 WP_245050925.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPG37_RS06915 (MPG37_06915) nadA 1429659..1430669 (-) 1011 WP_245050926.1 quinolinate synthase NadA -
  MPG37_RS06920 (MPG37_06920) - 1430656..1431462 (-) 807 WP_220994475.1 phosphatidylserine decarboxylase -
  MPG37_RS06925 (MPG37_06925) - 1431459..1431962 (-) 504 WP_000953102.1 hypothetical protein -
  MPG37_RS06930 (MPG37_06930) - 1431975..1432469 (-) 495 WP_015645602.1 hypothetical protein -
  MPG37_RS06935 (MPG37_06935) mqnP 1432462..1433346 (-) 885 WP_180585152.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPG37_RS06940 (MPG37_06940) comEC/comE3 1433375..1434688 (-) 1314 WP_245050927.1 ComEC/Rec2 family competence protein Machinery gene
  MPG37_RS06945 (MPG37_06945) - 1434685..1436145 (-) 1461 WP_245050928.1 replicative DNA helicase -
  MPG37_RS06950 (MPG37_06950) - 1436156..1437550 (-) 1395 WP_245050929.1 NAD(P)H-hydrate dehydratase -
  MPG37_RS06955 (MPG37_06955) crdS 1437553..1438755 (-) 1203 WP_245051787.1 copper-sensing histidine kinase CrdS -
  MPG37_RS06960 (MPG37_06960) crdR 1438721..1439362 (-) 642 WP_001169803.1 copper response regulator transcription factor CrdR -
  MPG37_RS06965 (MPG37_06965) - 1439449..1439673 (-) 225 Protein_1360 restriction endonuclease -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50226.22 Da        Isoelectric Point: 9.8368

>NTDB_id=666318 MPG37_RS06940 WP_245050927.1 1433375..1434688(-) (comEC/comE3) [Helicobacter pylori strain Hpfe114]
MKDKTFQGAFELLTTPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYATIKEPLKNLQYRYAQFFGKIKPCSFLESLRSCFFQTYSFSLTRKQDFKSHWRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLLSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALFPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLVRSFQVISLS
VLVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDGILNMPLTIPTIFVFSPLWLLGVHLFLT
ILSVRFFKVYLSMNVLSAGFFLYCCYQYIIMPSSIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=666318 MPG37_RS06940 WP_245050927.1 1433375..1434688(-) (comEC/comE3) [Helicobacter pylori strain Hpfe114]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGCTCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCCAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTACGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTCTTAGAGTCTTTAAGATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACGCGAAAACAAGATTTCAAATCGCATT
GGCGCCATTTCATTGATAGCGCTCATTCAAGCGCTTTAGTGGGCAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGATTTAAGAGACAGGGCTAATGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGATTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTTCTTTTATCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCTTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTATTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGTGCGATCTTTCCAGGTCATAAGCTTAAGC
GTATTGGTGTTCTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATGGTA
TTTTAAACATGCCTTTAACAATCCCTACAATTTTTGTTTTTTCGCCTTTATGGCTTTTGGGGGTGCATTTATTTTTAACG
ATTTTAAGCGTGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTGAGTGCGGGCTTTTTCTTGTATTGTTGTTATCA
ATATATTATAATGCCTAGTTCAATTGTGGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.279

100

0.943