Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPG37_RS05425 Genome accession   NZ_CP094064
Coordinates   1132831..1133235 (-) Length   134 a.a.
NCBI ID   WP_029647729.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe114     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1127831..1138235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG37_RS05375 (MPG37_05375) - 1128146..1129210 (-) 1065 WP_245050619.1 actin-related protein 2/3 complex subunit 5 family protein -
  MPG37_RS05380 (MPG37_05380) - 1129200..1129989 (-) 790 Protein_1046 hypothetical protein -
  MPG37_RS05385 (MPG37_05385) - 1129989..1130375 (-) 387 WP_245050621.1 DUF1294 domain-containing protein -
  MPG37_RS05390 (MPG37_05390) - 1130484..1130621 (-) 138 WP_180476032.1 hypothetical protein -
  MPG37_RS05395 (MPG37_05395) - 1130708..1130869 (-) 162 WP_229764878.1 lysozyme -
  MPG37_RS05400 (MPG37_05400) - 1130889..1131134 (-) 246 WP_014535438.1 lysozyme -
  MPG37_RS05405 (MPG37_05405) - 1131184..1131366 (-) 183 WP_245050623.1 lysozyme -
  MPG37_RS05410 (MPG37_05410) - 1131377..1131937 (-) 561 WP_154462112.1 hypothetical protein -
  MPG37_RS05415 (MPG37_05415) - 1131921..1132259 (-) 339 WP_000699911.1 hypothetical protein -
  MPG37_RS05420 (MPG37_05420) - 1132448..1132774 (-) 327 WP_245050625.1 sel1 repeat family protein -
  MPG37_RS05425 (MPG37_05425) dprB 1132831..1133235 (-) 405 WP_029647729.1 Holliday junction resolvase RuvX Machinery gene
  MPG37_RS05430 (MPG37_05430) dprA 1133232..1134032 (-) 801 WP_245050627.1 DNA-processing protein DprA Machinery gene
  MPG37_RS05435 (MPG37_05435) minE 1134044..1134277 (-) 234 WP_000051412.1 cell division topological specificity factor MinE -
  MPG37_RS05440 (MPG37_05440) minD 1134274..1135080 (-) 807 WP_001019101.1 septum site-determining protein MinD -
  MPG37_RS05445 (MPG37_05445) ilvC 1135104..1136096 (-) 993 WP_245050629.1 ketol-acid reductoisomerase -
  MPG37_RS05455 (MPG37_05455) - 1136345..1137127 (+) 783 WP_245050631.1 NAD+ synthase -
  MPG37_RS05460 (MPG37_05460) - 1137124..1138062 (+) 939 WP_245050633.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15254.78 Da        Isoelectric Point: 9.1725

>NTDB_id=666314 MPG37_RS05425 WP_029647729.1 1132831..1133235(-) (dprB) [Helicobacter pylori strain Hpfe114]
MILACDVGLKRIGIAMLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLGHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKDR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=666314 MPG37_RS05425 WP_029647729.1 1132831..1133235(-) (dprB) [Helicobacter pylori strain Hpfe114]
GTGATTTTGGCATGCGATGTGGGGCTGAAGCGCATTGGGATCGCTATGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCACGCATTGAACATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGGGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTAAAAGATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

95.489

99.254

0.948