Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   MPG37_RS00010 Genome accession   NZ_CP094064
Coordinates   1588..3021 (+) Length   477 a.a.
NCBI ID   WP_245051049.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe114     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG37_RS00005 (MPG37_00005) dnaA 1..1368 (+) 1368 WP_245051047.1 chromosomal replication initiator protein DnaA -
  MPG37_RS00010 (MPG37_00010) comH 1588..3021 (+) 1434 WP_245051049.1 competence protein Machinery gene
  MPG37_RS00020 (MPG37_00020) - 3199..3951 (+) 753 WP_245051050.1 exodeoxyribonuclease III -
  MPG37_RS00025 (MPG37_00025) - 3948..4583 (-) 636 WP_000668030.1 outer membrane protein -
  MPG37_RS00030 (MPG37_00030) - 4587..4940 (-) 354 WP_245051052.1 hypothetical protein -
  MPG37_RS00035 (MPG37_00035) recG 5022..6887 (+) 1866 WP_180408944.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54684.66 Da        Isoelectric Point: 6.8239

>NTDB_id=666303 MPG37_RS00010 WP_245051049.1 1588..3021(+) (comH) [Helicobacter pylori strain Hpfe114]
MKKTLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETILNPNRPTIPRNTQIVFSSKELKEPHQIPSLNALIQKPQNKPTSSQQSLQNFSYQESKLGSKNPKNSLLQPLAT
PNKISSANEVKTLTNDTKPPLKHSSEDQENNLFIAPPTEKTLPSNTPNADTNEHNESNENRDSVEKQAIRDPNVKEFACG
KWVYDDENLQAYRPSILKRVDEDKQTATDITPCDYSNAENKSGKIITPYTKISVHKTEPLEEPQTFEAKNNFTILQARSS
TEKCKRARVRKDGTIRQCYLIEEPLKQAWESEYEITTQLVKATYERPKQDDQTEPTFYETSELAYSSTRKSEITHNELNL
NEKFMEFVEVYEGHYLNDIVKESSEYKEWVKNHVRFKEGVCMVLEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=666303 MPG37_RS00010 WP_245051049.1 1588..3021(+) (comH) [Helicobacter pylori strain Hpfe114]
ATGAAAAAAACCCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGA
AATCAAAACTTCGCCACATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACTATCACCCACATATCCACTGCAATTGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGATCTTAAACCCTAACCGCCCTACTATTCCCAGAAACACCCAAATTGTTTTTTCTTCAAAAGA
ATTGAAAGAGCCACACCAAATACCTTCTTTAAACGCACTCATACAAAAACCACAAAACAAACCCACTTCATCGCAACAAT
CTCTTCAAAACTTTTCTTACCAAGAGTCCAAACTAGGCTCTAAAAACCCTAAAAACAGCCTTTTACAGCCTTTAGCCACT
CCTAATAAAATAAGCTCCGCTAATGAAGTTAAAACGCTAACAAACGACACTAAACCTCCTTTAAAGCATTCTTCAGAAGA
TCAAGAAAACAACCTCTTTATAGCGCCACCCACTGAAAAAACACTCCCTAGCAACACCCCTAACGCTGATACTAATGAAC
ACAATGAAAGCAATGAGAATAGGGATAGTGTGGAAAAACAAGCCATTAGAGATCCTAATGTCAAAGAATTTGCGTGCGGG
AAGTGGGTCTATGATGATGAAAATTTACAAGCCTATCGCCCAAGCATTTTAAAACGCGTTGATGAAGACAAACAGACTGC
AACAGACATTACCCCTTGCGACTACAGCAACGCTGAAAATAAAAGCGGTAAAATCATTACCCCCTATACTAAAATCTCTG
TTCATAAAACAGAGCCTTTAGAAGAGCCACAAACTTTTGAAGCTAAAAACAATTTTACCATCCTCCAAGCCAGAAGCTCT
ACAGAAAAATGCAAAAGAGCCAGAGTGCGAAAAGACGGCACGATTAGGCAATGCTATCTGATAGAAGAGCCTTTAAAACA
AGCGTGGGAGAGCGAGTATGAAATCACCACGCAGTTAGTGAAAGCCACTTATGAGCGCCCCAAACAAGACGATCAAACAG
AGCCGACTTTCTATGAAACCAGCGAATTGGCTTATTCTTCCACACGAAAAAGCGAAATAACGCATAATGAATTGAATTTG
AATGAAAAGTTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAGTCAAAGAAAGCAGTGAATACAA
AGAATGGGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAGCAACCACGAGCTAAAA
GCACGCCCTTGAGTATTGAAAATTCTCGTGTTGTTTGTGTCAAAAAGGGGAATTATTTATTCAATGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

91.649

100

0.92