Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPG68_RS05480 Genome accession   NZ_CP094063
Coordinates   1134428..1134832 (-) Length   134 a.a.
NCBI ID   WP_245026197.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe115     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1129428..1139832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG68_RS05440 (MPG68_05440) - 1129552..1130680 (-) 1129 Protein_1055 hypothetical protein -
  MPG68_RS05445 (MPG68_05445) - 1130670..1131455 (-) 786 Protein_1056 hypothetical protein -
  MPG68_RS05450 (MPG68_05450) - 1131455..1131841 (-) 387 WP_245026193.1 DUF1294 domain-containing protein -
  MPG68_RS05455 (MPG68_05455) - 1131930..1132130 (-) 201 WP_245027575.1 hypothetical protein -
  MPG68_RS05460 (MPG68_05460) - 1132180..1132836 (-) 657 WP_342367506.1 lysozyme -
  MPG68_RS05465 (MPG68_05465) - 1132865..1133425 (-) 561 WP_245026195.1 hypothetical protein -
  MPG68_RS05470 (MPG68_05470) - 1133409..1133747 (-) 339 WP_000699911.1 hypothetical protein -
  MPG68_RS05475 (MPG68_05475) - 1133935..1134327 (-) 393 WP_245026196.1 tetratricopeptide repeat protein -
  MPG68_RS05480 (MPG68_05480) dprB 1134428..1134832 (-) 405 WP_245026197.1 Holliday junction resolvase RuvX Machinery gene
  MPG68_RS05485 (MPG68_05485) dprA 1134829..1135629 (-) 801 WP_245026198.1 DNA-processing protein DprA Machinery gene
  MPG68_RS05490 (MPG68_05490) minE 1135641..1135874 (-) 234 WP_245026199.1 cell division topological specificity factor MinE -
  MPG68_RS05495 (MPG68_05495) minD 1135871..1136677 (-) 807 WP_120944752.1 septum site-determining protein MinD -
  MPG68_RS05500 (MPG68_05500) ilvC 1136696..1137688 (-) 993 WP_245026200.1 ketol-acid reductoisomerase -
  MPG68_RS05510 (MPG68_05510) - 1137937..1138719 (+) 783 WP_245026201.1 NAD+ synthase -
  MPG68_RS05515 (MPG68_05515) - 1138716..1139654 (+) 939 WP_245026202.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15214.82 Da        Isoelectric Point: 9.2303

>NTDB_id=666291 MPG68_RS05480 WP_245026197.1 1134428..1134832(-) (dprB) [Helicobacter pylori strain Hpfe115]
MILACDVGLKRIGIAMLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLGHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKKC

Nucleotide


Download         Length: 405 bp        

>NTDB_id=666291 MPG68_RS05480 WP_245026197.1 1134428..1134832(-) (dprB) [Helicobacter pylori strain Hpfe115]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTATGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCGCGCATTGAACATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGGGCATTTGGGTAAGAAAAACAAGCGACT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGTAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTAAAAAAGT
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

96.212

98.507

0.948