Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPG12_RS07355 Genome accession   NZ_CP094062
Coordinates   1544191..1544472 (-) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain Hpfe118     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1539191..1549472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG12_RS07335 (MPG12_07335) - 1539903..1541243 (-) 1341 WP_172416898.1 hypothetical protein -
  MPG12_RS07345 (MPG12_07345) comB4 1541563..1543926 (-) 2364 WP_245045780.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG12_RS07350 (MPG12_07350) comB3 1543928..1544191 (-) 264 WP_000584971.1 hypothetical protein Machinery gene
  MPG12_RS07355 (MPG12_07355) comB2 1544191..1544472 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPG12_RS07360 (MPG12_07360) - 1544617..1545444 (-) 828 WP_048944995.1 DUF5718 family protein -
  MPG12_RS07365 (MPG12_07365) - 1545534..1546586 (-) 1053 WP_021301516.1 MnmA/TRMU family protein -
  MPG12_RS07370 (MPG12_07370) dnaG 1546583..1548262 (-) 1680 WP_245045781.1 DNA primase -
  MPG12_RS07375 (MPG12_07375) groES 1548548..1548904 (+) 357 WP_000671953.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=666278 MPG12_RS07355 WP_001272686.1 1544191..1544472(-) (comB2) [Helicobacter pylori strain Hpfe118]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=666278 MPG12_RS07355 WP_001272686.1 1544191..1544472(-) (comB2) [Helicobacter pylori strain Hpfe118]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGATGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTTTTT
AAAGCCCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterProScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989