Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPG12_RS07210 Genome accession   NZ_CP094062
Coordinates   1507866..1509179 (-) Length   437 a.a.
NCBI ID   WP_245045753.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe118     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1502866..1514179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG12_RS07180 (MPG12_07180) nadC 1503329..1504150 (-) 822 WP_245045750.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPG12_RS07185 (MPG12_07185) nadA 1504150..1505160 (-) 1011 WP_220930973.1 quinolinate synthase NadA -
  MPG12_RS07190 (MPG12_07190) - 1505150..1505953 (-) 804 WP_245045751.1 phosphatidylserine decarboxylase -
  MPG12_RS07195 (MPG12_07195) - 1505950..1506453 (-) 504 WP_000953083.1 hypothetical protein -
  MPG12_RS07200 (MPG12_07200) - 1506466..1506960 (-) 495 WP_245045752.1 hypothetical protein -
  MPG12_RS07205 (MPG12_07205) mqnP 1506953..1507837 (-) 885 WP_021300711.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPG12_RS07210 (MPG12_07210) comEC/comE3 1507866..1509179 (-) 1314 WP_245045753.1 ComEC/Rec2 family competence protein Machinery gene
  MPG12_RS07215 (MPG12_07215) - 1509176..1510642 (-) 1467 WP_245045754.1 replicative DNA helicase -
  MPG12_RS07220 (MPG12_07220) - 1510653..1512047 (-) 1395 WP_245045756.1 NAD(P)H-hydrate dehydratase -
  MPG12_RS07225 (MPG12_07225) crdS 1512050..1513252 (-) 1203 WP_245046563.1 copper-sensing histidine kinase CrdS -
  MPG12_RS07230 (MPG12_07230) crdR 1513218..1513859 (-) 642 WP_245045759.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50179.12 Da        Isoelectric Point: 9.9128

>NTDB_id=666274 MPG12_RS07210 WP_245045753.1 1507866..1509179(-) (comEC/comE3) [Helicobacter pylori strain Hpfe118]
MKDKTFQGAFELLTTPREYLLCGVILSLLLAFNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYSTIKEPLKNLQYRHAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHWRRFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYAPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLVRSFQVISLS
VLVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDGILNMPLTIPTISVFSPLWLLGVHLFLT
ILSVRFFKVYLSMNVLSAGFFLYCCYQYIIMPSSIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=666274 MPG12_RS07210 WP_245045753.1 1507866..1509179(-) (comEC/comE3) [Helicobacter pylori strain Hpfe118]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAGAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTGGCGTTTAATCTTTATTTAGAATATTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCCAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATTCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCATGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTTTTGGAGTCTCTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACGCGAAAACAAGATTTCAAATCGCATT
GGCGCCGTTTCATTGACAGCGCTCATTCAAGCGCTTTAGTGGGTAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGGTTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATGCCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCTTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTTTTAAAGCACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGTGCGATCTTTTCAGGTCATAAGCTTAAGC
GTATTGGTGTTTTTGAACATGCTCATCATTGCACATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTTTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATGGTA
TTTTAAACATGCCTTTAACAATCCCTACGATTTCGGTTTTTTCGCCTTTATGGCTTTTAGGGGTGCATTTATTTTTAACG
ATTCTAAGCGTGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTCAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.508

100

0.945