Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG760_RS27800 Genome accession   NZ_CP108745
Coordinates   6227154..6227948 (-) Length   264 a.a.
NCBI ID   WP_266852333.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00963     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6222154..6232948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG760_RS27790 (OG760_27760) - 6223164..6224969 (+) 1806 WP_405913521.1 IucA/IucC family protein -
  OG760_RS27795 (OG760_27765) - 6225008..6226978 (+) 1971 WP_401607813.1 ATP-dependent DNA helicase -
  OG760_RS27800 (OG760_27770) dinR/lexA 6227154..6227948 (-) 795 WP_266852333.1 transcriptional repressor LexA Regulator
  OG760_RS27805 (OG760_27775) nrdR 6228503..6229015 (+) 513 WP_266852331.1 transcriptional regulator NrdR -
  OG760_RS27810 (OG760_27780) - 6229141..6232023 (+) 2883 WP_405913522.1 vitamin B12-dependent ribonucleotide reductase -
  OG760_RS27815 (OG760_27785) - 6232325..6232930 (+) 606 WP_266852327.1 YdbC family protein -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 28619.43 Da        Isoelectric Point: 7.4240

>NTDB_id=666273 OG760_RS27800 WP_266852333.1 6227154..6227948(-) (dinR/lexA) [Streptomyces sp. NBC_00963]
MTTTADTATITAQDRSQNRLEPVHTMNDAATGPEGQLPPRPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYP
PSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQTTDTTGKPAASYVPLVGRIAAGGPILAE
ESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLEGEATVKRFKREDGHVWLLPHN
AAYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=666273 OG760_RS27800 WP_266852333.1 6227154..6227948(-) (dinR/lexA) [Streptomyces sp. NBC_00963]
GTGACCACGACCGCAGACACCGCCACCATCACCGCCCAGGACCGTTCGCAGAACCGACTCGAGCCGGTGCACACCATGAA
TGACGCAGCAACGGGCCCCGAGGGCCAGCTGCCCCCGCGCCCCGCACGCTCGCTGCCCGGACGGCCCCCCGGTATCCGGG
CGGACAGTTCGGGGCTCACGGACCGGCAGCGGCGGGTGATCGAGGTGATCAGGGACTCCGTGCAGCGCCGTGGATACCCG
CCCTCCATGCGCGAGATCGGTCAGGCGGTGGGGCTGTCCAGCACCTCGTCCGTCGCTCACCAGCTGATGGCCCTGGAGCG
CAAGGGCTTCCTGCGCCGCGACCCGCACCGCCCCCGGGCCTACGAGGTCAGGGGCTCCGACCAGCCGAGCACCCAGACCA
CCGACACCACCGGCAAGCCCGCCGCGTCGTACGTCCCGCTGGTCGGCCGGATCGCCGCCGGTGGGCCGATCTTGGCTGAG
GAGTCGGTCGAGGACGTCTTCCCCCTCCCCCGGCAGCTGGTCGGCGACGGCGAGCTCTTCGTCCTCAAGGTCGTCGGCGA
CTCGATGATCGAGGCCGCGATCTGTGACGGCGACTGGGTCACGGTGCGACGCCAGCCCGTCGCCGAGAACGGCGACATCG
TGGCAGCCATGCTGGAGGGCGAGGCGACGGTCAAGCGCTTCAAGCGCGAGGACGGGCATGTGTGGCTGCTGCCGCACAAT
GCCGCCTACCAGCCGATCCCCGGCGACGAAGCCACGATCCTCGGCAAGGTAGTGGCTGTGCTCCGACGCGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(146-258)

LexA DNA binding domain (LexA_DNA_bind)

(57-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

80.303

0.371