Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPG12_RS05620 Genome accession   NZ_CP094062
Coordinates   1187354..1187758 (-) Length   134 a.a.
NCBI ID   WP_245045481.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe118     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1182354..1192758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG12_RS05580 (MPG12_05580) - 1182438..1183610 (-) 1173 WP_245045475.1 hypothetical protein -
  MPG12_RS05585 (MPG12_05585) - 1183600..1184385 (-) 786 WP_245045477.1 hypothetical protein -
  MPG12_RS05590 (MPG12_05590) - 1184385..1184766 (-) 382 Protein_1087 DUF1294 domain-containing protein -
  MPG12_RS05595 (MPG12_05595) - 1185097..1185258 (-) 162 WP_017280151.1 hypothetical protein -
  MPG12_RS05600 (MPG12_05600) - 1185278..1185778 (-) 501 WP_017281360.1 glycoside hydrolase family protein -
  MPG12_RS05605 (MPG12_05605) - 1185790..1186350 (-) 561 WP_000037148.1 hypothetical protein -
  MPG12_RS05610 (MPG12_05610) - 1186334..1186672 (-) 339 WP_000699911.1 hypothetical protein -
  MPG12_RS05615 (MPG12_05615) - 1186894..1187217 (-) 324 Protein_1092 tetratricopeptide repeat protein -
  MPG12_RS05620 (MPG12_05620) dprB 1187354..1187758 (-) 405 WP_245045481.1 Holliday junction resolvase RuvX Machinery gene
  MPG12_RS05625 (MPG12_05625) dprA 1187755..1188555 (-) 801 WP_245045483.1 DNA-processing protein DprA Machinery gene
  MPG12_RS05630 (MPG12_05630) minE 1188567..1188800 (-) 234 WP_000051412.1 cell division topological specificity factor MinE -
  MPG12_RS05635 (MPG12_05635) minD 1188797..1189603 (-) 807 WP_001019098.1 septum site-determining protein MinD -
  MPG12_RS05640 (MPG12_05640) ilvC 1189628..1190620 (-) 993 WP_245045485.1 ketol-acid reductoisomerase -
  MPG12_RS05650 (MPG12_05650) - 1190869..1191651 (+) 783 WP_245045486.1 NAD+ synthase -
  MPG12_RS05655 (MPG12_05655) - 1191648..1192586 (+) 939 WP_245045487.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15365.97 Da        Isoelectric Point: 9.4827

>NTDB_id=666270 MPG12_RS05620 WP_245045481.1 1187354..1187758(-) (dprB) [Helicobacter pylori strain Hpfe118]
MILACDVGLKRIGIAMLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEYFIKLLDFKGE
IVFINEDRSSIEACENLEHLGKKNKRLAIKDGRLDSLSACRILERYYQQVLKKR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=666270 MPG12_RS05620 WP_245045481.1 1187354..1187758(-) (dprB) [Helicobacter pylori strain Hpfe118]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTATGCTTTTAAACGGCGTTATTTTGCCTTTAGAGGC
GATTTTGCGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAATGCGCGTATTGAATATTTCATCAAGCTTTTGGATTTTAAGGGTGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTGTGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTATCAGCAGGTTTTAAAAAAGC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

94.697

98.507

0.933