Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB10   Type   Machinery gene
Locus tag   MPG12_RS00660 Genome accession   NZ_CP094062
Coordinates   134947..136149 (+) Length   400 a.a.
NCBI ID   WP_245045966.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe118     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 129947..141149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG12_RS00645 (MPG12_00645) - 132018..132152 (+) 135 WP_041200005.1 hypothetical protein -
  MPG12_RS00650 (MPG12_00650) - 132145..133278 (+) 1134 WP_245045964.1 VirB8/TrbF family protein -
  MPG12_RS00655 (MPG12_00655) - 133275..134950 (+) 1676 Protein_127 TrbG/VirB9 family P-type conjugative transfer protein -
  MPG12_RS00660 (MPG12_00660) comB10 134947..136149 (+) 1203 WP_245045966.1 DNA type IV secretion system protein ComB10 Machinery gene
  MPG12_RS00665 (MPG12_00665) - 136133..137122 (+) 990 Protein_129 collagen-like protein -
  MPG12_RS00670 (MPG12_00670) - 137175..138503 (-) 1329 WP_245045968.1 transposase -
  MPG12_RS00675 (MPG12_00675) tnpA 138540..138956 (+) 417 WP_100966189.1 IS200/IS605 family transposase -
  MPG12_RS00680 (MPG12_00680) - 139091..140289 (+) 1199 Protein_132 collagen-like protein -

Sequence

Protein


Download         Length: 400 a.a.        Molecular weight: 44719.45 Da        Isoelectric Point: 9.9651

>NTDB_id=666260 MPG12_RS00660 WP_245045966.1 134947..136149(+) (comB10) [Helicobacter pylori strain Hpfe118]
MNKSLLKKIGLVIGGVGVLMALGLLANKGSNNNNKEEIYSIEESKFPLSDYFFEEVKEEPKKEESPKTITTPQPTAPTTT
NVSTNPIITDYSHLNSNLNKQNDTITHLQQVLQSPPKMKPKLKHTKEQLEFLNTRLKPLEPTKPAIKPETEYGVDSFSNL
KYKDIGTNEHKLLRTITADRMIPAFLITPISSQIAGKVTAQVESDIFASMGRAVLIPKGSKVIGYYNNNNQIGQYRLNIA
WTRIITPQGINIMLTNARGADVKGYNGLVGKYISRNFQRYGIPLLTNTLSNGLLIGITSALANQQNRKGDGNPFFGDYLL
MQLTRNTGMGINQVINQMLRQYGAQNPIIIIREGSRVFITPNLDIFIPKPKDGEVLAEFFKEKKPLIKKSNEEVNNEEEI

Nucleotide


Download         Length: 1203 bp        

>NTDB_id=666260 MPG12_RS00660 WP_245045966.1 134947..136149(+) (comB10) [Helicobacter pylori strain Hpfe118]
ATGAATAAGTCCTTGCTTAAAAAGATAGGCTTAGTTATAGGGGGCGTTGGTGTTTTAATGGCATTAGGATTGCTTGCTAA
TAAAGGTTCAAACAATAACAATAAAGAAGAAATTTACAGCATAGAAGAAAGTAAATTCCCACTAAGCGATTATTTCTTTG
AAGAAGTCAAAGAAGAACCTAAAAAAGAAGAAAGCCCCAAAACAATAACTACGCCACAACCTACAGCTCCAACTACTACT
AATGTTTCAACTAATCCTATCATTACAGATTATAGTCATCTTAACAGCAATCTCAACAAGCAAAATGACACCATCACGCA
TTTGCAACAAGTTTTACAAAGCCCTCCTAAAATGAAACCTAAATTAAAGCATACTAAAGAGCAATTAGAGTTTTTAAACA
CACGCCTTAAACCTTTAGAACCAACTAAACCAGCCATTAAGCCTGAGACGGAATATGGCGTGGATAGTTTTAGCAATTTA
AAATATAAAGACATCGGCACTAATGAGCATAAGCTCTTAAGAACTATAACCGCTGATAGAATGATACCAGCCTTTTTAAT
CACGCCTATTAGTTCTCAAATCGCTGGAAAAGTAACCGCTCAAGTAGAGAGTGATATTTTTGCTTCTATGGGTAGAGCGG
TGCTAATTCCTAAAGGCTCTAAGGTTATAGGCTATTACAATAACAATAATCAAATCGGGCAATACCGCTTAAACATTGCT
TGGACTAGAATTATCACCCCTCAAGGCATAAATATCATGCTCACTAATGCAAGGGGGGCTGATGTGAAAGGCTATAATGG
CTTAGTAGGCAAATATATTAGCCGAAATTTTCAACGCTATGGTATCCCCTTACTCACTAACACGCTTTCTAATGGACTTT
TAATAGGAATTACTTCAGCCTTAGCTAATCAACAAAATAGAAAAGGTGATGGCAACCCTTTTTTTGGGGATTACTTGCTT
ATGCAACTCACTAGAAACACAGGCATGGGGATTAACCAAGTTATCAATCAAATGCTAAGACAATATGGAGCGCAAAACCC
CATTATCATCATTAGAGAGGGGAGCAGAGTGTTTATTACCCCTAATTTAGACATCTTTATCCCCAAACCAAAAGATGGGG
AGGTTCTAGCGGAGTTTTTTAAAGAGAAAAAACCACTAATCAAAAAATCAAACGAGGAAGTTAATAATGAAGAAGAAATC
TAA

Domains

Predicted by InterProScan.

Bacterial conjugation TrbI-like protein (TrbI)

(175-365)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB10 Helicobacter pylori P1

53.015

99.5

0.527