Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPG58_RS07060 Genome accession   NZ_CP094061
Coordinates   1478703..1480016 (-) Length   437 a.a.
NCBI ID   WP_245011726.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe120     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1473703..1485016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG58_RS07030 (MPG58_07030) nadC 1474166..1474987 (-) 822 WP_245011722.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPG58_RS07035 (MPG58_07035) nadA 1474987..1475997 (-) 1011 WP_245011723.1 quinolinate synthase NadA -
  MPG58_RS07040 (MPG58_07040) - 1475987..1476790 (-) 804 WP_245011724.1 phosphatidylserine decarboxylase -
  MPG58_RS07045 (MPG58_07045) - 1476787..1477290 (-) 504 WP_000953102.1 hypothetical protein -
  MPG58_RS07050 (MPG58_07050) - 1477303..1477797 (-) 495 WP_245011725.1 hypothetical protein -
  MPG58_RS07055 (MPG58_07055) mqnP 1477790..1478632 (-) 843 WP_231264506.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPG58_RS07060 (MPG58_07060) comEC/comE3 1478703..1480016 (-) 1314 WP_245011726.1 ComEC/Rec2 family competence protein Machinery gene
  MPG58_RS07065 (MPG58_07065) - 1480013..1481473 (-) 1461 WP_245011727.1 replicative DNA helicase -
  MPG58_RS07070 (MPG58_07070) - 1481484..1482878 (-) 1395 WP_245011728.1 NAD(P)H-hydrate dehydratase -
  MPG58_RS07075 (MPG58_07075) crdS 1482881..1484083 (-) 1203 WP_245012248.1 copper-sensing histidine kinase CrdS -
  MPG58_RS07080 (MPG58_07080) crdR 1484049..1484690 (-) 642 WP_001169802.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 49964.89 Da        Isoelectric Point: 9.8515

>NTDB_id=666251 MPG58_RS07060 WP_245011726.1 1478703..1480016(-) (comEC/comE3) [Helicobacter pylori strain Hpfe120]
MKDKTFQGAFELLATPKEYLLCGVILSLLLVLNLYLEYLNYQKLDFSKSTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYATIKEPLKNLQYRYAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHVRHFIDSAHSSTLVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRSFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLARSFQVISLS
VLVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDGILNMPLTIPTISVFSPLWLLGAHLFLT
ILSTRFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=666251 MPG58_RS07060 WP_245011726.1 1478703..1480016(-) (comEC/comE3) [Helicobacter pylori strain Hpfe120]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTGCAACCCCCAAAGAATATTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTGGTGCTTAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAATCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTACGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTTTTGGAGTCTCTAAAATCATGCTTTTTTCAAACTTATTCGTTTTCTTTAACACGAAAACAAGATTTCAAATCGCATG
TGCGCCATTTCATTGATAGCGCTCATTCAAGCACTTTAGTGGGTAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGAGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGATTCCATTTAGGGATTTT
GAGTGCGAGCGTGTATTTCCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTCTTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAGCTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGCGCGATCTTTTCAGGTCATAAGCTTAAGC
GTGCTAGTGTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTTCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATGGTA
TTTTAAACATGCCTTTAACAATCCCTACGATTTCGGTTTTTTCGCCTTTGTGGCTTTTGGGGGCGCATTTATTTTTAACG
ATTTTGAGCACGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

93.593

100

0.936