Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPG58_RS05500 Genome accession   NZ_CP094061
Coordinates   1166310..1166714 (-) Length   134 a.a.
NCBI ID   WP_245011554.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe120     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1161310..1171714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG58_RS05470 (MPG58_05470) - 1161553..1162674 (-) 1122 WP_245011550.1 hypothetical protein -
  MPG58_RS05475 (MPG58_05475) - 1162664..1163449 (-) 786 WP_245011551.1 hypothetical protein -
  MPG58_RS05480 (MPG58_05480) - 1163449..1163835 (-) 387 WP_180398486.1 DUF1294 domain-containing protein -
  MPG58_RS05485 (MPG58_05485) - 1164170..1164832 (-) 663 WP_342369222.1 glycoside hydrolase family protein -
  MPG58_RS05490 (MPG58_05490) - 1164861..1165421 (-) 561 WP_245011553.1 hypothetical protein -
  MPG58_RS05495 (MPG58_05495) - 1165405..1165743 (-) 339 WP_000699911.1 hypothetical protein -
  MPG58_RS07800 - 1165930..1166141 (-) 212 Protein_1073 sel1 repeat family protein -
  MPG58_RS05500 (MPG58_05500) dprB 1166310..1166714 (-) 405 WP_245011554.1 Holliday junction resolvase RuvX Machinery gene
  MPG58_RS05505 (MPG58_05505) dprA 1166711..1167511 (-) 801 WP_245011555.1 DNA-processing protein DprA Machinery gene
  MPG58_RS05510 (MPG58_05510) minE 1167523..1167756 (-) 234 WP_000051412.1 cell division topological specificity factor MinE -
  MPG58_RS05515 (MPG58_05515) minD 1167753..1168559 (-) 807 WP_001019101.1 septum site-determining protein MinD -
  MPG58_RS05520 (MPG58_05520) ilvC 1168578..1169570 (-) 993 WP_021299945.1 ketol-acid reductoisomerase -
  MPG58_RS05530 (MPG58_05530) - 1169819..1170601 (+) 783 WP_245011556.1 NAD+ synthase -
  MPG58_RS05535 (MPG58_05535) - 1170598..1171536 (+) 939 WP_245011557.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15266.79 Da        Isoelectric Point: 9.1283

>NTDB_id=666248 MPG58_RS05500 WP_245011554.1 1166310..1166714(-) (dprB) [Helicobacter pylori strain Hpfe120]
MILACDVGLKRIGIAMLLNGVVLPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEYFIKLLDFKGE
IVFINEDRSSIEAYENLGHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKDR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=666248 MPG58_RS05500 WP_245011554.1 1166310..1166714(-) (dprB) [Helicobacter pylori strain Hpfe120]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTATGCTTTTGAACGGCGTTGTCTTACCTTTAGAAGC
GATTTTGCGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCACGCATTGAATATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGGGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTGAAAGATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

93.985

99.254

0.933