Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPG39_RS07020 Genome accession   NZ_CP094059
Coordinates   1462272..1462553 (-) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain Hpfe122     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1457272..1467553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG39_RS07000 (MPG39_07000) - 1457984..1459324 (-) 1341 WP_245080221.1 hypothetical protein -
  MPG39_RS07010 (MPG39_07010) comB4 1459644..1462007 (-) 2364 WP_245080223.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG39_RS07015 (MPG39_07015) comB3 1462009..1462272 (-) 264 WP_000584971.1 hypothetical protein Machinery gene
  MPG39_RS07020 (MPG39_07020) comB2 1462272..1462553 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPG39_RS07025 (MPG39_07025) - 1462698..1463525 (-) 828 WP_245080225.1 DUF5718 family protein -
  MPG39_RS07030 (MPG39_07030) - 1463617..1464669 (-) 1053 WP_245080227.1 MnmA/TRMU family protein -
  MPG39_RS07035 (MPG39_07035) dnaG 1464666..1466345 (-) 1680 WP_245080229.1 DNA primase -
  MPG39_RS07040 (MPG39_07040) groES 1466621..1466977 (+) 357 WP_245080231.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=666235 MPG39_RS07020 WP_001272686.1 1462272..1462553(-) (comB2) [Helicobacter pylori strain Hpfe122]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=666235 MPG39_RS07020 WP_001272686.1 1462272..1462553(-) (comB2) [Helicobacter pylori strain Hpfe122]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGATTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989