Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   MPG39_RS07015 Genome accession   NZ_CP094059
Coordinates   1462009..1462272 (-) Length   87 a.a.
NCBI ID   WP_000584971.1    Uniprot ID   A0A0L0QIL1
Organism   Helicobacter pylori strain Hpfe122     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1457009..1467272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG39_RS07000 (MPG39_07000) - 1457984..1459324 (-) 1341 WP_245080221.1 hypothetical protein -
  MPG39_RS07010 (MPG39_07010) comB4 1459644..1462007 (-) 2364 WP_245080223.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG39_RS07015 (MPG39_07015) comB3 1462009..1462272 (-) 264 WP_000584971.1 hypothetical protein Machinery gene
  MPG39_RS07020 (MPG39_07020) comB2 1462272..1462553 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPG39_RS07025 (MPG39_07025) - 1462698..1463525 (-) 828 WP_245080225.1 DUF5718 family protein -
  MPG39_RS07030 (MPG39_07030) - 1463617..1464669 (-) 1053 WP_245080227.1 MnmA/TRMU family protein -
  MPG39_RS07035 (MPG39_07035) dnaG 1464666..1466345 (-) 1680 WP_245080229.1 DNA primase -
  MPG39_RS07040 (MPG39_07040) groES 1466621..1466977 (+) 357 WP_245080231.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10076.17 Da        Isoelectric Point: 9.5507

>NTDB_id=666234 MPG39_RS07015 WP_000584971.1 1462009..1462272(-) (comB3) [Helicobacter pylori strain Hpfe122]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFVPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIARSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=666234 MPG39_RS07015 WP_000584971.1 1462009..1462272(-) (comB3) [Helicobacter pylori strain Hpfe122]
ATGATTATCCTGTCGGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATCTGATTTCTGTTTTTGTGCCTTTTATCTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGTTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAGAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0L0QIL1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

96.552

100

0.966