Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPG39_RS06895 Genome accession   NZ_CP094059
Coordinates   1434419..1435732 (-) Length   437 a.a.
NCBI ID   WP_245080209.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe122     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1429419..1440732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG39_RS06865 (MPG39_06865) nadC 1429882..1430703 (-) 822 WP_245080205.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPG39_RS06870 (MPG39_06870) nadA 1430703..1431713 (-) 1011 WP_245080206.1 quinolinate synthase NadA -
  MPG39_RS06875 (MPG39_06875) - 1431703..1432506 (-) 804 WP_245080207.1 phosphatidylserine decarboxylase -
  MPG39_RS06880 (MPG39_06880) - 1432503..1433006 (-) 504 WP_000953102.1 hypothetical protein -
  MPG39_RS06885 (MPG39_06885) - 1433019..1433513 (-) 495 WP_245080208.1 hypothetical protein -
  MPG39_RS06890 (MPG39_06890) mqnP 1433506..1434390 (-) 885 WP_180461828.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPG39_RS06895 (MPG39_06895) comEC/comE3 1434419..1435732 (-) 1314 WP_245080209.1 ComEC/Rec2 family competence protein Machinery gene
  MPG39_RS06900 (MPG39_06900) - 1435729..1437189 (-) 1461 WP_245080210.1 replicative DNA helicase -
  MPG39_RS06905 (MPG39_06905) - 1437200..1438594 (-) 1395 WP_245080211.1 NAD(P)H-hydrate dehydratase -
  MPG39_RS06910 (MPG39_06910) crdS 1438597..1439799 (-) 1203 WP_245081327.1 copper-sensing histidine kinase CrdS -
  MPG39_RS06915 (MPG39_06915) crdR 1439765..1440406 (-) 642 WP_245080212.1 copper response regulator transcription factor CrdR -
  MPG39_RS06920 (MPG39_06920) - 1440490..1440714 (-) 225 Protein_1351 restriction endonuclease subunit R -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50083.07 Da        Isoelectric Point: 9.9068

>NTDB_id=666231 MPG39_RS06895 WP_245080209.1 1434419..1435732(-) (comEC/comE3) [Helicobacter pylori strain Hpfe122]
MKDKTFQGAFELLTTPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKIKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRHAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHWRRFIDSAHSSTLVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLARSFQVISLS
ALVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLLLHAVGLGSLLDGILNMPLTIPTISVFSPLWLLGAHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=666231 MPG39_RS06895 WP_245080209.1 1434419..1435732(-) (comEC/comE3) [Helicobacter pylori strain Hpfe122]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGCTCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCCACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAATTAAAGATCAAAAAACTTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCATGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTTTTGGAGTCTTTAAAGTCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGGAAACAAGATTTCAAATCGCATT
GGCGCCGTTTCATTGATAGCGCTCATTCAAGCACTTTAGTGGGCAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGATTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTCCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTCTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGCGCGATCTTTTCAGGTCATAAGCTTAAGC
GCGCTGGTGTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGCTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATGGTA
TTTTAAACATGCCTTTAACAATCCCTACGATTTCGGTTTTTTCGCCTTTATGGCTTTTAGGGGCGCATTTATTTTTAACG
ATTCTAAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTGAGTGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGCTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.966

100

0.95