Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG760_RS07395 Genome accession   NZ_CP108745
Coordinates   1633726..1634721 (+) Length   331 a.a.
NCBI ID   WP_266858088.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00963     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1628726..1639721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG760_RS07380 (OG760_07400) - 1630646..1631938 (+) 1293 WP_401600473.1 ABC transporter substrate-binding protein -
  OG760_RS07385 (OG760_07405) - 1631951..1632877 (+) 927 WP_328376446.1 sugar ABC transporter permease -
  OG760_RS07390 (OG760_07410) - 1632902..1633729 (+) 828 WP_266858090.1 carbohydrate ABC transporter permease -
  OG760_RS07395 (OG760_07415) cytR 1633726..1634721 (+) 996 WP_266858088.1 LacI family DNA-binding transcriptional regulator Regulator
  OG760_RS07400 (OG760_07420) - 1634740..1636689 (+) 1950 WP_405912032.1 cellulase family glycosylhydrolase -
  OG760_RS07405 (OG760_07425) - 1636808..1638670 (+) 1863 WP_405912033.1 hypothetical protein -

Sequence

Protein


Download         Length: 331 a.a.        Molecular weight: 34969.77 Da        Isoelectric Point: 7.5800

>NTDB_id=666231 OG760_RS07395 WP_266858088.1 1633726..1634721(+) (cytR) [Streptomyces sp. NBC_00963]
MSPAPAAGSRPTIKDVAAQAGVSTAAVSKVFNNTGRISEPTRRRVLETAGRLGWSPSASASALRRARTHTVAMVVRRPTD
VLGTDLHFSELITGLESELSPRGYGLLLHLTGDVREETALYERLAAEGRVDGAVLTEHRADDPRPPLLERLGLPAVLLGT
AHGSGVSEAVRHLLDLGHRRIAYVTGPTGLLHTRFRQRVFEETLAGAGLAPVAVLHTDFTEAAATSATERLLALDPRPTA
IVFANDSMAVCGIGTAQRAGLSVPAELSVVGYDNLPVGSWIHPRLTTVDQYVQRAGAAAARALLAQCGEDVPPEPLTGQP
RLVVRESTGPV

Nucleotide


Download         Length: 996 bp        

>NTDB_id=666231 OG760_RS07395 WP_266858088.1 1633726..1634721(+) (cytR) [Streptomyces sp. NBC_00963]
GTGAGCCCGGCTCCGGCGGCCGGCTCCCGGCCCACGATCAAGGACGTCGCCGCGCAGGCCGGGGTCTCCACGGCGGCCGT
GTCCAAGGTCTTCAACAACACCGGCCGGATCTCCGAGCCGACCCGGCGCCGCGTCCTGGAGACGGCCGGGCGGCTCGGCT
GGTCGCCGAGCGCGTCGGCGAGCGCGCTGCGCAGGGCCCGTACGCACACGGTCGCGATGGTCGTACGCCGCCCCACCGAC
GTTCTCGGCACCGACCTGCACTTCTCCGAGCTGATCACCGGTCTTGAGAGCGAGCTGTCGCCGCGCGGGTACGGGCTGCT
GCTGCATCTGACCGGCGATGTACGCGAGGAGACCGCGCTGTACGAACGCCTCGCCGCCGAGGGCCGGGTCGACGGGGCCG
TGCTGACCGAGCACCGGGCCGACGACCCGCGCCCGCCGCTGCTCGAACGGCTCGGGCTGCCCGCGGTCCTGCTGGGCACG
GCGCACGGCAGCGGAGTCAGCGAGGCGGTCCGCCATCTGCTGGATCTGGGACACCGGCGCATCGCCTATGTGACCGGGCC
GACGGGGCTGCTCCACACGCGCTTCCGGCAGCGGGTCTTCGAGGAGACCCTGGCCGGGGCGGGCCTGGCCCCGGTCGCGG
TGCTCCACACGGACTTCACCGAGGCGGCGGCCACTTCCGCCACCGAGCGGCTGCTCGCCCTCGACCCGCGGCCCACCGCC
ATCGTCTTCGCCAACGACTCGATGGCGGTCTGCGGCATCGGCACGGCGCAGCGCGCGGGGCTCTCCGTGCCCGCGGAACT
GTCCGTCGTCGGCTATGACAACCTGCCGGTCGGCAGCTGGATCCACCCCCGGCTGACCACGGTCGACCAGTACGTCCAGC
GGGCCGGCGCGGCTGCCGCCCGGGCGCTGCTCGCGCAGTGCGGCGAGGACGTACCCCCTGAACCCCTCACCGGACAACCC
CGGCTCGTCGTACGCGAGTCGACCGGTCCCGTCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(12-57)

Periplasmic binding protein-like domain (Peripla_BP_3)

(170-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

35.608

100

0.363