Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   MPG39_RS00010 Genome accession   NZ_CP094059
Coordinates   1597..3030 (+) Length   477 a.a.
NCBI ID   WP_245080371.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe122     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG39_RS00005 (MPG39_00005) dnaA 1..1368 (+) 1368 WP_245080369.1 chromosomal replication initiator protein DnaA -
  MPG39_RS00010 (MPG39_00010) comH 1597..3030 (+) 1434 WP_245080371.1 competence protein Machinery gene
  MPG39_RS00020 (MPG39_00020) - 3208..3960 (+) 753 WP_245080373.1 exodeoxyribonuclease III -
  MPG39_RS00025 (MPG39_00025) - 3957..4592 (-) 636 WP_000668030.1 outer membrane protein -
  MPG39_RS00030 (MPG39_00030) - 4596..4949 (-) 354 WP_000836998.1 hypothetical protein -
  MPG39_RS00035 (MPG39_00035) recG 5031..6896 (+) 1866 WP_245080374.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54729.61 Da        Isoelectric Point: 7.0810

>NTDB_id=666215 MPG39_RS00010 WP_245080371.1 1597..3030(+) (comH) [Helicobacter pylori strain Hpfe122]
MKKTLCLSFFLTFSNPLQAFVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETTLNPNRPTIPRNTQIVFSSKELKESHQMPSLNVPIQKPQNKPTSSQQSLQNFLHSESKLGSKNPKNSFLQPLAT
PSKISSANEVKTPTNDTKPPLKHSSEDQENNLFITPPTEKTLPNNTPNANVNEHNESNENRDNVEKQAIRDPNIKEFACG
KWVYDDENLQAYRPSILKRVDEDKQTATDITPCDYSNAENKSGKITTPYTKISVHKTEPLEEPQTFEAKNNFMILQARSS
TEKCKRARARKDGTTRQCYLIEEPLKQAWESEYQITTQLVKATYERPKQDDQTEPTFYETSELAYSSTRKSEITHNELNL
NEKFMEFVEVYEGHYLNDIVKESSEYKEWVKNHVHFKEGVCMVLEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=666215 MPG39_RS00010 WP_245080371.1 1597..3030(+) (comH) [Helicobacter pylori strain Hpfe122]
ATGAAAAAAACCCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCCTTTGTAATCGAGCTTTTAGAAGA
AATCAAAACTTCGCCGCATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACTATCACCCACATATCCACTGCAATTGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGACTTTAAACCCTAACCGCCCTACTATTCCCAGAAACACCCAGATTGTTTTTTCTTCAAAAGA
ATTGAAAGAGTCGCACCAAATGCCTTCTTTAAACGTGCCCATACAAAAACCACAAAACAAACCCACTTCATCGCAACAAT
CTCTTCAAAACTTTCTTCACTCAGAGTCCAAACTAGGCTCTAAAAACCCTAAAAACAGCTTTTTACAGCCTTTAGCCACT
CCTAGTAAAATAAGCTCCGCTAATGAAGTTAAAACGCCAACAAACGACACTAAACCCCCTTTAAAGCATTCTTCAGAAGA
TCAAGAAAACAACCTCTTTATAACGCCACCCACTGAAAAAACGCTCCCTAACAACACTCCTAACGCTAATGTTAATGAAC
ACAATGAAAGCAATGAGAATAGGGATAATGTGGAAAAACAAGCGATTAGAGATCCTAATATTAAAGAATTTGCGTGCGGG
AAGTGGGTCTATGATGATGAAAATTTACAAGCCTATCGCCCAAGCATTTTAAAACGCGTTGATGAAGACAAACAGACTGC
GACAGACATTACCCCTTGCGATTACAGCAACGCTGAAAATAAAAGCGGTAAAATCACTACCCCCTATACTAAAATCTCTG
TTCATAAAACAGAGCCTTTAGAAGAGCCGCAAACCTTTGAAGCTAAAAACAATTTTATGATTCTTCAAGCCAGAAGCTCT
ACAGAAAAATGCAAAAGGGCTAGAGCGCGAAAAGACGGCACGACTAGGCAATGCTATTTAATAGAAGAGCCTTTAAAACA
AGCGTGGGAGAGCGAGTATCAAATCACCACGCAATTAGTGAAAGCCACTTATGAGCGCCCCAAACAAGACGATCAAACAG
AGCCCACTTTTTATGAAACCAGCGAATTGGCTTATTCTTCCACACGAAAAAGCGAAATAACGCATAATGAATTGAATTTG
AATGAAAAGTTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAGTCAAAGAAAGCAGTGAATACAA
AGAATGGGTTAAAAACCATGTGCACTTTAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAGCAACCACGAGCCAAAA
GCACGCCTTTGAGTATTGAAAATTCTCGTGTTGTTTGTGTCAAAAAGGGGAATTATTTATTCAACGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

92.067

100

0.925