Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPG08_RS07115 Genome accession   NZ_CP094058
Coordinates   1485645..1486958 (-) Length   437 a.a.
NCBI ID   WP_245042203.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe123     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1480645..1491958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG08_RS07085 (MPG08_07085) nadC 1481108..1481929 (-) 822 WP_245042197.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPG08_RS07090 (MPG08_07090) nadA 1481929..1482939 (-) 1011 WP_180417470.1 quinolinate synthase NadA -
  MPG08_RS07095 (MPG08_07095) - 1482926..1483732 (-) 807 WP_245042199.1 phosphatidylserine decarboxylase -
  MPG08_RS07100 (MPG08_07100) - 1483729..1484232 (-) 504 WP_245042201.1 helix-turn-helix domain-containing protein -
  MPG08_RS07105 (MPG08_07105) - 1484245..1484739 (-) 495 WP_245042202.1 hypothetical protein -
  MPG08_RS07110 (MPG08_07110) mqnP 1484732..1485616 (-) 885 WP_024422554.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPG08_RS07115 (MPG08_07115) comEC/comE3 1485645..1486958 (-) 1314 WP_245042203.1 ComEC/Rec2 family competence protein Machinery gene
  MPG08_RS07120 (MPG08_07120) - 1486955..1488415 (-) 1461 WP_245042204.1 replicative DNA helicase -
  MPG08_RS07125 (MPG08_07125) - 1488426..1489820 (-) 1395 WP_245042205.1 NAD(P)H-hydrate dehydratase -
  MPG08_RS07130 (MPG08_07130) crdS 1489823..1491025 (-) 1203 WP_245043001.1 copper-sensing histidine kinase CrdS -
  MPG08_RS07135 (MPG08_07135) crdR 1490991..1491632 (-) 642 WP_180656062.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50355.40 Da        Isoelectric Point: 9.7355

>NTDB_id=666210 MPG08_RS07115 WP_245042203.1 1485645..1486958(-) (comEC/comE3) [Helicobacter pylori strain Hpfe123]
MKDKTFQGAFELLTTPKEYLWCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRHAQFFGKIKPCSFLESMKSCFFQTYSFSLTRKQDFKSHWRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSVSMYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIMLLPKLLFSVGFLLSVCGVWYIFLFLKHTQTFFKTSSFWVRSFQIISLS
ALVFLNMLIIVHAFFPMFSPYQLFSIPLGLIFIVFFPLSLLLHAVGLGSLLDGILNMPLTIPTIFVSSPLWLLGVHLFLT
ILSACFFKVYLSMNVLSAGFFLYCCYQYIIMPSSIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=666210 MPG08_RS07115 WP_245042203.1 1485645..1486958(-) (comEC/comE3) [Helicobacter pylori strain Hpfe123]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTGTGGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGCTTAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCCAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCATGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
ATTTTTAGAGTCTATGAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGAAAACAAGATTTCAAATCGCATT
GGCGCCATTTCATTGATAGCGCTCATTCAAGCGCTTTAGTGGGTAATTTGTATCGAGCGTTATTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTATTAGCCATTAGCGGATTCCATTTAGGGATTTT
GAGCGTGAGCATGTATTTCCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAATGTTACTCCCTAAATTACTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAACCTTTTTTAAAACCTCTTCTTTTTGGGTGCGATCTTTTCAGATCATAAGCTTAAGC
GCGCTAGTGTTTTTGAACATGCTCATCATTGTGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTACTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATGGTA
TTTTAAACATGCCTTTAACAATCCCTACGATTTTTGTTTCTTCGCCTTTATGGCTTTTGGGGGTGCATTTATTTTTAACG
ATTCTAAGCGCGTGTTTTTTTAAAGTTTATTTAAGTATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTCAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.737

100

0.947