Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPG08_RS05650 Genome accession   NZ_CP094058
Coordinates   1189952..1190356 (-) Length   134 a.a.
NCBI ID   WP_245041901.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe123     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1184952..1195356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG08_RS05610 (MPG08_05610) - 1185105..1186226 (-) 1122 WP_245041897.1 hypothetical protein -
  MPG08_RS05615 (MPG08_05615) - 1186216..1187001 (-) 786 WP_245042993.1 hypothetical protein -
  MPG08_RS05620 (MPG08_05620) - 1187005..1187388 (-) 384 Protein_1092 DUF1294 domain-containing protein -
  MPG08_RS05625 (MPG08_05625) - 1187724..1188113 (-) 390 WP_245041898.1 lysozyme -
  MPG08_RS05630 (MPG08_05630) - 1188156..1188404 (-) 249 WP_245041899.1 lysozyme -
  MPG08_RS05635 (MPG08_05635) - 1188415..1188975 (-) 561 WP_245041900.1 hypothetical protein -
  MPG08_RS05640 (MPG08_05640) - 1188959..1189297 (-) 339 WP_000699911.1 hypothetical protein -
  MPG08_RS05645 (MPG08_05645) - 1189481..1189843 (-) 363 WP_280637068.1 tetratricopeptide repeat protein -
  MPG08_RS05650 (MPG08_05650) dprB 1189952..1190356 (-) 405 WP_245041901.1 Holliday junction resolvase RuvX Machinery gene
  MPG08_RS05655 (MPG08_05655) dprA 1190353..1191153 (-) 801 WP_245041903.1 DNA-processing protein DprA Machinery gene
  MPG08_RS05660 (MPG08_05660) minE 1191165..1191398 (-) 234 WP_000051412.1 cell division topological specificity factor MinE -
  MPG08_RS05665 (MPG08_05665) minD 1191395..1192201 (-) 807 WP_245041905.1 septum site-determining protein MinD -
  MPG08_RS05670 (MPG08_05670) ilvC 1192225..1193217 (-) 993 WP_245041907.1 ketol-acid reductoisomerase -
  MPG08_RS05680 (MPG08_05680) - 1193466..1194248 (+) 783 WP_245041909.1 NAD+ synthase -
  MPG08_RS05685 (MPG08_05685) - 1194245..1195183 (+) 939 WP_245041911.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15201.75 Da        Isoelectric Point: 8.8305

>NTDB_id=666207 MPG08_RS05650 WP_245041901.1 1189952..1190356(-) (dprB) [Helicobacter pylori strain Hpfe123]
MILACDVGLKRIGIAALLNGVILPLEAILRQNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEYFIKLLDFKGE
IVFINEDRSSIEAYENLGHLGKKNKWLAIKDGRLDSLSACRILERYCQQVLKKC

Nucleotide


Download         Length: 405 bp        

>NTDB_id=666207 MPG08_RS05650 WP_245041901.1 1189952..1190356(-) (dprB) [Helicobacter pylori strain Hpfe123]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTGCACTTTTAAACGGCGTTATTTTGCCTTTAGAAGC
GATCTTACGCCAAAATAGGAATCAGGCCTCTAGGGATTTGAGCGATTTGTTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCGCGCATTGAATATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATCAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGGGCATTTGGGTAAGAAAAACAAGTGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTAGAGCGCTATTGCCAGCAGGTTTTGAAAAAGT
GTTGA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

94.697

98.507

0.933