Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG520_RS27745 Genome accession   NZ_CP108734
Coordinates   6213684..6215417 (-) Length   577 a.a.
NCBI ID   WP_399326510.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00984     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6208684..6220417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG520_RS27735 (OG520_27670) - 6210511..6211689 (+) 1179 WP_399326833.1 RNA polymerase sigma factor -
  OG520_RS27740 (OG520_27675) rcrQ 6211753..6213684 (-) 1932 WP_266419527.1 ABC transporter ATP-binding protein Regulator
  OG520_RS27745 (OG520_27680) rcrP 6213684..6215417 (-) 1734 WP_399326510.1 ABC transporter ATP-binding protein Regulator
  OG520_RS27750 (OG520_27685) - 6215587..6217032 (-) 1446 WP_406014996.1 FGGY family carbohydrate kinase -
  OG520_RS27755 (OG520_27690) - 6217181..6217480 (-) 300 WP_406014997.1 YtxH domain-containing protein -
  OG520_RS27775 (OG520_27710) - 6218588..6218788 (+) 201 WP_406014998.1 hypothetical protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62645.72 Da        Isoelectric Point: 5.1537

>NTDB_id=666199 OG520_RS27745 WP_399326510.1 6213684..6215417(-) (rcrP) [Streptomyces sp. NBC_00984]
MLIKLLRAYLGPYRKPILLLVLLQLLQTCASLYLPTLNADIIDNGVVKGDTGYILEFGGIMIAVSIGQVVCNTGAVYFGA
RTASALGRDIRASIFDRVQSFSAREVGRFGAPSLITRTTNDVQQVQMLVLMTFTLMVSAPIMCVGGIIMALGQDVPLSAV
LLAVVPVLGIAVSLIVKRMRPLFRTMQERLDTVNRVLREQITGNRVIRAFVRDGYEEERFRGSNTELTDVALSTGRLMAL
MFPTVMTVVNVSSIAVLWFGAQRIDSGGMEIGALTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLETESSVVP
PVKPVRELAARGHLEVRGADFRYPGAEEPVLRAVDLVARPGETTAIIGSTGSGKSTLLGLVPRLFDVTDGQVLVDGTDVR
TLEPALLAKTVSLVPQKPYLFSGTVATNLRYGNPDATDEELWHALEVAQAKEFVTALEHGLDAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRGALTHETSEATVVIVAQRVSTIRDADRILVLDEGRVVGSGTHHELMDGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=666199 OG520_RS27745 WP_399326510.1 6213684..6215417(-) (rcrP) [Streptomyces sp. NBC_00984]
GTGCTCATAAAACTCCTGCGGGCCTATCTCGGTCCGTACAGAAAACCCATCCTGCTGCTGGTCCTCCTCCAACTGCTGCA
GACCTGCGCCAGCCTCTACCTGCCCACCCTGAACGCCGACATCATCGACAACGGTGTCGTCAAGGGGGACACGGGCTACA
TCCTCGAATTCGGCGGCATCATGATCGCCGTCAGCATCGGCCAGGTGGTCTGCAACACGGGGGCCGTCTACTTCGGCGCC
CGTACCGCGTCCGCGCTCGGCCGTGACATCCGGGCGTCGATCTTCGACCGGGTGCAGTCGTTCTCGGCCCGTGAGGTCGG
ACGATTCGGGGCGCCCTCGCTGATCACCCGTACGACCAATGACGTCCAGCAGGTCCAGATGCTGGTGCTGATGACCTTCA
CCCTGATGGTGTCGGCCCCGATCATGTGCGTCGGCGGCATCATCATGGCGCTCGGCCAGGACGTCCCGCTGTCGGCGGTG
CTGCTCGCGGTGGTGCCGGTGCTCGGCATCGCGGTGAGCCTCATCGTGAAACGGATGCGTCCGCTGTTCCGCACGATGCA
GGAGCGGCTCGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTCATCCGCGCCTTCGTCCGTGACG
GCTACGAGGAGGAGCGCTTCCGCGGCTCCAACACCGAGCTGACGGATGTGGCGCTGTCCACGGGCCGGCTGATGGCGCTG
ATGTTCCCCACCGTGATGACGGTCGTGAACGTCTCGTCGATCGCCGTGCTCTGGTTCGGTGCCCAGCGCATCGACAGCGG
CGGCATGGAGATCGGCGCGCTGACCGCCTTCCTCGCCTATCTGATGCAGATCGTCATGTCGGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGTGCCGAGCGCATCCAGGAGGTCCTGGAGACCGAGTCCAGCGTGGTCCCG
CCGGTCAAGCCGGTCCGCGAGCTGGCCGCCCGCGGTCATCTGGAGGTGCGCGGTGCGGACTTCCGCTACCCGGGCGCCGA
GGAGCCGGTGCTGCGGGCGGTGGATCTGGTGGCCCGCCCCGGCGAGACCACCGCGATCATCGGGTCGACGGGCAGCGGGA
AGTCGACGCTGCTCGGGCTCGTGCCGCGGCTGTTCGATGTGACGGACGGCCAGGTGCTGGTCGACGGTACGGATGTGCGG
ACGCTGGAGCCGGCACTGCTGGCGAAGACCGTGAGTCTCGTTCCGCAGAAGCCGTATCTGTTCTCCGGGACGGTCGCGAC
GAACCTGCGGTACGGAAACCCGGACGCGACCGACGAGGAGCTGTGGCACGCGCTGGAGGTCGCGCAGGCCAAGGAGTTCG
TCACGGCGCTGGAGCACGGTCTGGACGCGCCGATCGCGCAGGGCGGCACCAATGTCTCGGGCGGGCAGCGGCAGCGTCTG
GCCATCGCCAGGACGCTGGTGCAGCGCCCGGAGATCTATCTCTTCGACGACTCGTTCTCCGCACTCGACTACGCCACCGA
CGCCGCGCTGCGCGGGGCGCTCACGCACGAGACGTCCGAGGCGACCGTGGTGATCGTGGCGCAGCGGGTGTCCACCATCC
GCGACGCGGACCGGATCCTGGTGCTGGACGAGGGCCGGGTCGTCGGCTCCGGCACCCATCACGAGCTGATGGACGGCAAT
GAAACGTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCGTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.309

100

0.407