Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   MPG08_RS00705 Genome accession   NZ_CP094058
Coordinates   150440..151177 (+) Length   245 a.a.
NCBI ID   WP_245042435.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe123     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 145440..156177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG08_RS00680 (MPG08_00680) panD 147590..147940 (+) 351 WP_245042431.1 aspartate 1-decarboxylase -
  MPG08_RS00685 (MPG08_00685) - 147951..148244 (+) 294 WP_000347917.1 YbaB/EbfC family nucleoid-associated protein -
  MPG08_RS00690 (MPG08_00690) - 148244..149239 (+) 996 WP_245042946.1 PDZ domain-containing protein -
  MPG08_RS00695 (MPG08_00695) comB6 149247..150302 (+) 1056 WP_245042432.1 P-type conjugative transfer protein TrbL Machinery gene
  MPG08_RS00700 (MPG08_00700) comB7 150318..150443 (+) 126 WP_245042433.1 comB7 lipoprotein Machinery gene
  MPG08_RS00705 (MPG08_00705) comB8 150440..151177 (+) 738 WP_245042435.1 virB8 family protein Machinery gene
  MPG08_RS00710 (MPG08_00710) comB9 151177..152139 (+) 963 WP_245042436.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  MPG08_RS00715 (MPG08_00715) comB10 152132..153268 (+) 1137 WP_245042437.1 DNA type IV secretion system protein ComB10 Machinery gene
  MPG08_RS00720 (MPG08_00720) - 153335..154747 (+) 1413 WP_245042438.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  MPG08_RS00725 (MPG08_00725) gmd 154761..155906 (+) 1146 WP_245042439.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 28558.76 Da        Isoelectric Point: 8.9604

>NTDB_id=666199 MPG08_RS00705 WP_245042435.1 150440..151177(+) (comB8) [Helicobacter pylori strain Hpfe123]
MKEKPFNSEQLIYLEELLSHQERHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALILAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKVTRYSITEI
TNRGD

Nucleotide


Download         Length: 738 bp        

>NTDB_id=666199 MPG08_RS00705 WP_245042435.1 150440..151177(+) (comB8) [Helicobacter pylori strain Hpfe123]
ATGAAGGAAAAGCCTTTCAATAGCGAGCAATTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAGGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTTAGATTAGAGAGGAACCGCTTGAAAATCGCTT
ATAAACTCTTAGGCTTGATGAGTTTTATCGCTCTTATCTTAGCGATTGTTTTAATCAGTGTTCTACCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAATCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAGGATTTGATCAAAACGCAAAACAGCATTTAT
GCGCAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
TTCTATTGCGGCTAAACTCATGAACGAAAACAAGCTGGTGTATGAAAAGCGTTATAAGATCGTGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAGTTACTCGCTACAGCATCACTGAAATC
ACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

96.356

100

0.971