Detailed information NTG0666197

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: MPG08_RS00695
• Genome accession: NZ_CP094058
• Coordinates: 149247..150302 (+)
• Length: 351 a.a.
• NCBI ID: WP_245042432.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe123
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 144247..155302

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG08_RS00665 (MPG08_00665)	-	144670..145083 (+)	414	WP_001023005.1	universal stress protein	-
MPG08_RS00670 (MPG08_00670)	-	145103..145378 (+)	276	WP_000784919.1	ATP-dependent Clp protease adaptor ClpS	-
MPG08_RS00675 (MPG08_00675)	-	145378..147600 (+)	2223	WP_245042429.1	ATP-dependent Clp protease ATP-binding subunit	-
MPG08_RS00680 (MPG08_00680)	panD	147590..147940 (+)	351	WP_245042431.1	aspartate 1-decarboxylase	-
MPG08_RS00685 (MPG08_00685)	-	147951..148244 (+)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
MPG08_RS00690 (MPG08_00690)	-	148244..149239 (+)	996	WP_245042946.1	PDZ domain-containing protein	-
MPG08_RS00695 (MPG08_00695)	comB6	149247..150302 (+)	1056	WP_245042432.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG08_RS00700 (MPG08_00700)	comB7	150318..150443 (+)	126	WP_245042433.1	comB7 lipoprotein	Machinery gene
MPG08_RS00705 (MPG08_00705)	comB8	150440..151177 (+)	738	WP_245042435.1	virB8 family protein	Machinery gene
MPG08_RS00710 (MPG08_00710)	comB9	151177..152139 (+)	963	WP_245042436.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG08_RS00715 (MPG08_00715)	comB10	152132..153268 (+)	1137	WP_245042437.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG08_RS00720 (MPG08_00720)	-	153335..154747 (+)	1413	WP_245042438.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39867.82 Da
• Isoelectric Point: 8.8165

>NTDB_id=666197 MPG08_RS00695 WP_245042432.1 149247..150302(+) (comB6) [Helicobacter pylori strain Hpfe123]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSVSVLTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNAINSLQYITTPPASSSVSSSTRESATKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=666197 MPG08_RS00695 WP_245042432.1 149247..150302(+) (comB6) [Helicobacter pylori strain Hpfe123]
ATGAAAAATGACGCTTATGAGATTATTCTTTCTTGGTTTATCACGCCTTTAACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCACAATTGGTGTTTAATAGTGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGTTAGCGTGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCATGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCAATCATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTTGCATGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGCTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCCAACCTCAGCCAAAACGCCATTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTAGCGTTTCTTCTTCTACAAGAGAAAGTGCCACTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	96.866	100	0.969