Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPG66_RS06865 Genome accession   NZ_CP094056
Coordinates   1417484..1418797 (-) Length   437 a.a.
NCBI ID   WP_245024708.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe124     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1412484..1423797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG66_RS06835 (MPG66_06835) nadC 1412947..1413768 (-) 822 WP_245024701.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPG66_RS06840 (MPG66_06840) nadA 1413768..1414778 (-) 1011 WP_203296868.1 quinolinate synthase NadA -
  MPG66_RS06845 (MPG66_06845) - 1414768..1415571 (-) 804 WP_245024703.1 phosphatidylserine decarboxylase -
  MPG66_RS06850 (MPG66_06850) - 1415568..1416071 (-) 504 WP_000953106.1 hypothetical protein -
  MPG66_RS06855 (MPG66_06855) - 1416084..1416578 (-) 495 WP_245024705.1 hypothetical protein -
  MPG66_RS06860 (MPG66_06860) mqnP 1416571..1417455 (-) 885 WP_245024706.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPG66_RS06865 (MPG66_06865) comEC/comE3 1417484..1418797 (-) 1314 WP_245024708.1 ComEC/Rec2 family competence protein Machinery gene
  MPG66_RS06870 (MPG66_06870) - 1418794..1420254 (-) 1461 WP_245024710.1 replicative DNA helicase -
  MPG66_RS06875 (MPG66_06875) - 1420265..1421659 (-) 1395 WP_245024712.1 NAD(P)H-hydrate dehydratase -
  MPG66_RS06880 (MPG66_06880) crdS 1421662..1422864 (-) 1203 WP_245025828.1 copper-sensing histidine kinase CrdS -
  MPG66_RS06885 (MPG66_06885) crdR 1422830..1423471 (-) 642 WP_245024714.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50190.29 Da        Isoelectric Point: 9.9383

>NTDB_id=666190 MPG66_RS06865 WP_245024708.1 1417484..1418797(-) (comEC/comE3) [Helicobacter pylori strain Hpfe124]
MKDKTFQGAFELLTTPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYATIKEPLKNLQYRHAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSYWRRFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLMRSFQVISLS
VLIFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLLLHAVGLGSLLDRILNMPLAIPTISISSPLWLLGVHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=666190 MPG66_RS06865 WP_245024708.1 1417484..1418797(-) (comEC/comE3) [Helicobacter pylori strain Hpfe124]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCACTCAATCTTTATTTAGAATATTTGAATTACCAAAAGCTTGATTTTTCAAAACCCACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCATGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTTTTAGAGTCTTTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGAAAACAAGATTTCAAATCGTATT
GGCGCCGTTTCATTGATAGCGCTCATTCAAGCGCTTTAGTGGGTAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGGGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGATTCCATTTAGGGATTTT
GAGCGCGAGCGTTTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ACGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAGCTTTTGATTTTAGCATG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGATGCGATCGTTTCAGGTCATAAGCTTAAGC
GTGCTAATTTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTACTCTTGCATGCTGTGGGTTTAGGGTCTTTATTGGATCGCA
TTTTAAACATGCCTTTAGCAATCCCTACGATTTCAATCTCTTCGCCTTTATGGCTTTTGGGGGTGCATTTATTTTTAACG
ATTCTAAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.737

100

0.947