Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPG66_RS05290 Genome accession   NZ_CP094056
Coordinates   1105113..1105517 (-) Length   134 a.a.
NCBI ID   WP_245024498.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe124     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1100113..1110517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG66_RS05250 (MPG66_05250) - 1100332..1101393 (-) 1062 WP_245024482.1 hypothetical protein -
  MPG66_RS05255 (MPG66_05255) - 1101383..1102168 (-) 786 WP_245024484.1 hypothetical protein -
  MPG66_RS05260 (MPG66_05260) - 1102168..1102549 (-) 382 Protein_1028 DUF1294 domain-containing protein -
  MPG66_RS05265 (MPG66_05265) - 1102887..1103048 (-) 162 WP_240446564.1 lysozyme -
  MPG66_RS05270 (MPG66_05270) - 1103068..1103479 (-) 412 Protein_1030 glycoside hydrolase family protein -
  MPG66_RS05275 (MPG66_05275) - 1103490..1104050 (-) 561 WP_245024494.1 hypothetical protein -
  MPG66_RS05280 (MPG66_05280) - 1104034..1104372 (-) 339 WP_000699911.1 hypothetical protein -
  MPG66_RS05285 (MPG66_05285) - 1104503..1104982 (-) 480 WP_245024496.1 tetratricopeptide repeat protein -
  MPG66_RS05290 (MPG66_05290) dprB 1105113..1105517 (-) 405 WP_245024498.1 Holliday junction resolvase RuvX Machinery gene
  MPG66_RS05295 (MPG66_05295) dprA 1105514..1106314 (-) 801 WP_245024500.1 DNA-processing protein DprA Machinery gene
  MPG66_RS05300 (MPG66_05300) minE 1106326..1106559 (-) 234 WP_000051412.1 cell division topological specificity factor MinE -
  MPG66_RS05305 (MPG66_05305) minD 1106556..1107362 (-) 807 WP_001019098.1 septum site-determining protein MinD -
  MPG66_RS05310 (MPG66_05310) ilvC 1107387..1108379 (-) 993 WP_245024502.1 ketol-acid reductoisomerase -
  MPG66_RS05320 (MPG66_05320) - 1108627..1109409 (+) 783 WP_245024504.1 NAD+ synthase -
  MPG66_RS05325 (MPG66_05325) - 1109406..1110344 (+) 939 WP_245024505.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15283.79 Da        Isoelectric Point: 9.9538

>NTDB_id=666186 MPG66_RS05290 WP_245024498.1 1105113..1105517(-) (dprB) [Helicobacter pylori strain Hpfe124]
MILACDVGLKRIGIATLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGK
IVFINEDRSSIEAYENLGHLGKKNKRLAIKDGRLDSLSACRILERYYQQVLKDR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=666186 MPG66_RS05290 WP_245024498.1 1105113..1105517(-) (dprB) [Helicobacter pylori strain Hpfe124]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTACGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTGCGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCGCGCATTGAGCATTTCATCAAACTTTTGGATTTTAAGGGCAAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGGGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGTGCTTGCAGGATCTTGGAGCGCTATTATCAGCAGGTTTTAAAAGATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

93.985

99.254

0.933