Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   MPG66_RS00010 Genome accession   NZ_CP094056
Coordinates   1589..3028 (+) Length   479 a.a.
NCBI ID   WP_245024874.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe124     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG66_RS00005 (MPG66_00005) dnaA 1..1368 (+) 1368 WP_075707454.1 chromosomal replication initiator protein DnaA -
  MPG66_RS00010 (MPG66_00010) comH 1589..3028 (+) 1440 WP_245024874.1 competence protein Machinery gene
  MPG66_RS00020 (MPG66_00020) - 3208..3960 (+) 753 WP_245024876.1 exodeoxyribonuclease III -
  MPG66_RS00025 (MPG66_00025) - 3957..4592 (-) 636 WP_015642211.1 outer membrane protein -
  MPG66_RS00030 (MPG66_00030) - 4596..4949 (-) 354 WP_000836998.1 hypothetical protein -
  MPG66_RS00035 (MPG66_00035) recG 5031..6896 (+) 1866 WP_245024878.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 54931.90 Da        Isoelectric Point: 6.6632

>NTDB_id=666174 MPG66_RS00010 WP_245024874.1 1589..3028(+) (comH) [Helicobacter pylori strain Hpfe124]
MKKTLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETTLNPNRPTIPRNTQIVFSSKELKESHPHQMPSLNAPMQKPQNKLSSSQQSPQNFSYPEPKLGSKNSKNSLLQPL
VTPSKISPTNETQTPTNDTKPPLKHSSEDQENNLFITPPTEKTLPNNTSNADISENNESNENRDNVEKQAIRDPNIKEFA
CGKWVYDDENLQAYRPSILKRVDEDKQTATDITPCDYSTAENKSGKIITPYTKISVHKTEPLEEPQTFEAKNNFTILQAR
SSTEKCKRARARKDGTIRQCYLIEEPLKQAWESEYEITTQLVKAIYERPKQDDQIDPTFYETSELAYSSTRKSEITHNEL
NLNEKFMEFVEVYEGHYLNDIIKESSEYKEWVKNHVRFKEGVCMVLEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=666174 MPG66_RS00010 WP_245024874.1 1589..3028(+) (comH) [Helicobacter pylori strain Hpfe124]
ATGAAAAAAACCCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGA
AATCAAAACTTCGCCGCATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACAATCACTCACATATCCACTGCAATTGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGACCTTAAACCCTAACCGCCCTACTATCCCTAGAAACACCCAAATTGTTTTTTCTTCAAAAGA
ATTGAAAGAGTCGCATCCGCACCAAATGCCTTCTTTAAACGCGCCCATGCAAAAACCACAAAATAAACTTAGCTCATCGC
AACAATCTCCTCAAAACTTTTCTTACCCAGAGCCCAAACTAGGCTCTAAAAACTCTAAAAACAGCCTTTTACAGCCTTTA
GTAACTCCTAGCAAAATAAGCCCCACTAACGAAACTCAAACGCCAACAAACGACACCAAACCCCCTTTAAAGCATTCTTC
AGAAGATCAAGAAAACAACCTCTTTATAACGCCACCCACCGAAAAAACGCTCCCTAACAACACCTCTAACGCTGATATTA
GTGAAAACAATGAAAGCAATGAGAATAGGGATAATGTGGAAAAACAAGCCATTAGAGATCCTAATATTAAAGAATTTGCG
TGCGGGAAGTGGGTCTATGATGATGAAAATTTACAAGCCTACCGCCCAAGCATTTTAAAACGCGTTGATGAAGACAAACA
AACTGCGACAGACATTACCCCTTGCGATTACAGCACCGCTGAAAATAAAAGCGGTAAAATTATTACCCCCTATACTAAAA
TCTCTGTTCATAAAACAGAGCCTTTAGAAGAGCCACAAACCTTTGAAGCTAAAAACAATTTCACCATTCTCCAAGCCAGA
AGCTCTACGGAAAAATGCAAAAGGGCTAGAGCGCGAAAAGACGGCACGATTAGGCAATGCTATCTCATAGAAGAGCCTTT
AAAACAAGCGTGGGAGAGTGAGTATGAAATCACCACGCAATTAGTGAAAGCCATTTATGAGCGCCCCAAACAAGACGATC
AAATAGATCCGACTTTCTATGAAACCAGCGAATTGGCTTATTCTTCCACACGAAAAAGCGAAATAACGCATAATGAATTG
AATTTGAATGAAAAATTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAATCAAAGAAAGCAGTGA
ATACAAAGAATGGGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAGCAACCACGAG
CCAAAAGCACGCCCTTGAGTATTGAAAATTCTCGTGTTGTTTGTGTCAAAAAGGGGAATTATTTATTCAACGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

96.66

100

0.967