Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPF85_RS06815 Genome accession   NZ_CP094054
Coordinates   1420069..1421382 (-) Length   437 a.a.
NCBI ID   WP_245013445.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe125     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1415069..1426382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF85_RS06785 (MPF85_06785) nadC 1415532..1416353 (-) 822 WP_245013442.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPF85_RS06790 (MPF85_06790) nadA 1416353..1417363 (-) 1011 WP_180515877.1 quinolinate synthase NadA -
  MPF85_RS06795 (MPF85_06795) - 1417350..1418156 (-) 807 WP_245013443.1 phosphatidylserine decarboxylase -
  MPF85_RS06800 (MPF85_06800) - 1418153..1418656 (-) 504 WP_000953102.1 hypothetical protein -
  MPF85_RS06805 (MPF85_06805) - 1418669..1419163 (-) 495 WP_245013444.1 hypothetical protein -
  MPF85_RS06810 (MPF85_06810) mqnP 1419156..1420040 (-) 885 WP_000913965.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPF85_RS06815 (MPF85_06815) comEC/comE3 1420069..1421382 (-) 1314 WP_245013445.1 ComEC/Rec2 family competence protein Machinery gene
  MPF85_RS06820 (MPF85_06820) - 1421379..1422839 (-) 1461 WP_180450407.1 replicative DNA helicase -
  MPF85_RS06825 (MPF85_06825) - 1422851..1424244 (-) 1394 Protein_1334 NAD(P)H-hydrate dehydratase -
  MPF85_RS06830 (MPF85_06830) crdS 1424247..1425449 (-) 1203 WP_245013935.1 copper-sensing histidine kinase CrdS -
  MPF85_RS06835 (MPF85_06835) crdR 1425415..1426056 (-) 642 WP_024774021.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50058.98 Da        Isoelectric Point: 9.7962

>NTDB_id=666169 MPF85_RS06815 WP_245013445.1 1420069..1421382(-) (comEC/comE3) [Helicobacter pylori strain Hpfe125]
MKDKTFHGAFELLTTPKECLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYATIKEPLKNLQYRYAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHWRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSTSVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLVRSFQVISLS
ALVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLLLHAVGLGSLLDGILNMPLTIPTISVFSPLWLLGAHLFLT
ILSTRFFKVYLSMNVLSTGFFLYCCYQYIIMPSSIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=666169 MPF85_RS06815 WP_245013445.1 1420069..1421382(-) (comEC/comE3) [Helicobacter pylori strain Hpfe125]
TTGAAAGATAAAACTTTTCATGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATGCTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGCTTAATCTTTATTTAGAATATTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTACGCACAATTTTTTGGCAAAATCAAACCTTGCTC
GTTTTTGGAGTCTTTAAAGTCATGCTTTTTTCAAACTTATTCGTTTTCTTTAACACGAAAACAAGATTTCAAATCGCATT
GGCGCCATTTCATTGACAGCGCTCATTCAAGCGCTTTAGTGGGTAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGATTTAAGGGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGGTTCCATTTAGGGATTTT
GAGCACGAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAGCTTTTGATTTTAGCGTG
CTGTATTGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGTGCGATCTTTTCAGGTCATAAGCTTAAGC
GCACTAGTGTTTTTGAACATGCTCATCATTGCACATGCCTTTTTCCCCATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTACTCTTGCATGCCGTGGGTTTGGGGTCTTTGTTGGATGGTA
TTTTAAACATGCCTTTAACAATCCCTACAATTTCGGTTTTTTCGCCTTTATGGCTTTTGGGGGCGCATTTATTTTTAACG
ATTCTAAGCACGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCACGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTCAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-385)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.05

100

0.941