Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPF85_RS02095 Genome accession   NZ_CP094054
Coordinates   436098..436502 (+) Length   134 a.a.
NCBI ID   WP_060758111.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe125     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 431098..441502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF85_RS02060 (MPF85_02060) - 431270..432208 (-) 939 WP_245013731.1 tetraacyldisaccharide 4'-kinase -
  MPF85_RS02065 (MPF85_02065) - 432205..432987 (-) 783 WP_245013732.1 NAD+ synthase -
  MPF85_RS02075 (MPF85_02075) ilvC 433236..434228 (+) 993 WP_245013733.1 ketol-acid reductoisomerase -
  MPF85_RS02080 (MPF85_02080) minD 434253..435059 (+) 807 WP_001019101.1 septum site-determining protein MinD -
  MPF85_RS02085 (MPF85_02085) minE 435056..435289 (+) 234 WP_000051412.1 cell division topological specificity factor MinE -
  MPF85_RS02090 (MPF85_02090) dprA 435301..436101 (+) 801 WP_245013734.1 DNA-processing protein DprA Machinery gene
  MPF85_RS02095 (MPF85_02095) dprB 436098..436502 (+) 405 WP_060758111.1 Holliday junction resolvase RuvX Machinery gene
  MPF85_RS02100 (MPF85_02100) - 436562..437101 (+) 540 Protein_415 tetratricopeptide repeat protein -
  MPF85_RS02105 (MPF85_02105) - 437290..437628 (+) 339 WP_000699916.1 hypothetical protein -
  MPF85_RS02110 (MPF85_02110) - 437612..438172 (+) 561 WP_245013735.1 hypothetical protein -
  MPF85_RS02115 (MPF85_02115) - 438183..438632 (+) 450 WP_245013736.1 lysozyme -
  MPF85_RS02120 (MPF85_02120) - 438697..438858 (+) 162 WP_245013737.1 lysozyme -
  MPF85_RS02125 (MPF85_02125) - 439185..439571 (+) 387 WP_154423216.1 DUF1294 domain-containing protein -
  MPF85_RS02130 (MPF85_02130) - 439577..440362 (+) 786 WP_245013738.1 hypothetical protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15224.69 Da        Isoelectric Point: 9.1725

>NTDB_id=666163 MPF85_RS02095 WP_060758111.1 436098..436502(+) (dprB) [Helicobacter pylori strain Hpfe125]
MILACDVGLKRIGIATLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLGHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKDR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=666163 MPF85_RS02095 WP_060758111.1 436098..436502(+) (dprB) [Helicobacter pylori strain Hpfe125]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTACGCTTTTAAACGGTGTTATCTTGCCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGTAAGCCCAATGAAAGCTATGCGGACACGAATGCGCGCATTGAACATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGGGCATTTGGGCAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGTAGAATCTTGGAGCGCTATTGCCAGCAGGTTTTGAAAGATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

95.489

99.254

0.948