Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPF87_RS07035 Genome accession   NZ_CP094052
Coordinates   1461055..1462368 (-) Length   437 a.a.
NCBI ID   WP_245012576.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe126     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1456055..1467368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF87_RS07005 (MPF87_07005) nadC 1456518..1457339 (-) 822 WP_245012572.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPF87_RS07010 (MPF87_07010) nadA 1457339..1458349 (-) 1011 WP_245012573.1 quinolinate synthase NadA -
  MPF87_RS07015 (MPF87_07015) - 1458339..1459142 (-) 804 WP_245012574.1 phosphatidylserine decarboxylase -
  MPF87_RS07020 (MPF87_07020) - 1459139..1459642 (-) 504 WP_033122087.1 hypothetical protein -
  MPF87_RS07025 (MPF87_07025) - 1459655..1460149 (-) 495 WP_245012575.1 hypothetical protein -
  MPF87_RS07030 (MPF87_07030) mqnP 1460142..1461026 (-) 885 WP_154465373.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPF87_RS07035 (MPF87_07035) comEC/comE3 1461055..1462368 (-) 1314 WP_245012576.1 ComEC/Rec2 family competence protein Machinery gene
  MPF87_RS07040 (MPF87_07040) - 1462365..1463825 (-) 1461 WP_245012577.1 replicative DNA helicase -
  MPF87_RS07045 (MPF87_07045) - 1463836..1465230 (-) 1395 WP_245012578.1 NAD(P)H-hydrate dehydratase -
  MPF87_RS07050 (MPF87_07050) crdS 1465233..1466435 (-) 1203 WP_245013088.1 copper-sensing histidine kinase CrdS -
  MPF87_RS07055 (MPF87_07055) crdR 1466401..1467042 (-) 642 WP_245013089.1 copper response regulator transcription factor CrdR -
  MPF87_RS07060 (MPF87_07060) - 1467127..1467356 (-) 230 Protein_1378 restriction endonuclease subunit R -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50101.06 Da        Isoelectric Point: 9.9068

>NTDB_id=666145 MPF87_RS07035 WP_245012576.1 1461055..1462368(-) (comEC/comE3) [Helicobacter pylori strain Hpfe126]
MKDKTFQGAFELLATPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYATIKEPLKNLQYRHAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHWRRFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQTFFKTSSFLMRSFQVISLS
ALVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDSILNMPLTIPTISIPSPLWLLGVHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSSIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=666145 MPF87_RS07035 WP_245012576.1 1461055..1462368(-) (comEC/comE3) [Helicobacter pylori strain Hpfe126]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTGCAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGCTTAATCTTTATTTAGAATATTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCATGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
ATTTTTGGAGTCTTTAAAGTCATGCTTTTTTCAAACCTATTCTTTTTCTTTAACACGAAAACAAGATTTCAAATCGCATT
GGCGCCGTTTCATTGATAGCGCTCATTCAAGCGCTTTAGTGGGTAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGGTTTCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAGCTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTTTTAAAACACACTCAAACCTTTTTTAAAACCTCTTCTTTTTTGATGCGATCTTTTCAGGTCATAAGCTTAAGC
GCGCTAGTGTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTTTTGCATGCTGTGGGTTTGGGGTCTTTGCTGGATAGCA
TTTTAAACATGCCTTTAACAATCCCTACGATTTCAATCCCTTCGCCTTTATGGCTTTTGGGGGTGCATTTATTTTTAACG
ATTTTAAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTCAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-385)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

95.423

100

0.954