Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPF87_RS05505 Genome accession   NZ_CP094052
Coordinates   1154202..1154606 (-) Length   134 a.a.
NCBI ID   WP_245012417.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe126     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1149202..1159606
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF87_RS05460 (MPF87_05460) - 1149479..1150585 (-) 1107 WP_245012413.1 hypothetical protein -
  MPF87_RS05465 (MPF87_05465) - 1150575..1151360 (-) 786 WP_245012414.1 hypothetical protein -
  MPF87_RS05470 (MPF87_05470) - 1151360..1151746 (-) 387 WP_088357198.1 DUF1294 domain-containing protein -
  MPF87_RS05475 (MPF87_05475) - 1152077..1152238 (-) 162 WP_231207324.1 lysozyme -
  MPF87_RS05480 (MPF87_05480) - 1152258..1152503 (-) 246 WP_245012415.1 lysozyme -
  MPF87_RS05485 (MPF87_05485) - 1152509..1152757 (-) 249 WP_245012416.1 lysozyme -
  MPF87_RS05490 (MPF87_05490) - 1152768..1153328 (-) 561 WP_029567493.1 hypothetical protein -
  MPF87_RS05495 (MPF87_05495) - 1153312..1153650 (-) 339 WP_000699911.1 hypothetical protein -
  MPF87_RS05500 (MPF87_05500) - 1153839..1154069 (-) 231 WP_280637683.1 sel1 repeat family protein -
  MPF87_RS05505 (MPF87_05505) dprB 1154202..1154606 (-) 405 WP_245012417.1 Holliday junction resolvase RuvX Machinery gene
  MPF87_RS05510 (MPF87_05510) dprA 1154603..1155403 (-) 801 WP_058337826.1 DNA-processing protein DprA Machinery gene
  MPF87_RS05515 (MPF87_05515) minE 1155415..1155648 (-) 234 WP_000051412.1 cell division topological specificity factor MinE -
  MPF87_RS05520 (MPF87_05520) minD 1155645..1156451 (-) 807 WP_245012418.1 septum site-determining protein MinD -
  MPF87_RS05525 (MPF87_05525) ilvC 1156470..1157462 (-) 993 WP_245012419.1 ketol-acid reductoisomerase -
  MPF87_RS05535 (MPF87_05535) - 1157710..1158492 (+) 783 WP_245012420.1 NAD+ synthase -
  MPF87_RS05540 (MPF87_05540) - 1158489..1159427 (+) 939 WP_245012421.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15216.73 Da        Isoelectric Point: 8.8749

>NTDB_id=666141 MPF87_RS05505 WP_245012417.1 1154202..1154606(-) (dprB) [Helicobacter pylori strain Hpfe126]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEACENLEHLGKKNKRLSIKDGRLDSLSACRILERYCQQVLKKH

Nucleotide


Download         Length: 405 bp        

>NTDB_id=666141 MPF87_RS05505 WP_245012417.1 1154202..1154606(-) (dprB) [Helicobacter pylori strain Hpfe126]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTGCACTTTTAAACGGCGTTATTTTGCCTTTAGAAGC
GATTTTGCGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGAGAAAAAAACATTCAAGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCAGACACGAACGCACGCATTGAACATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGTATAGAAGCCTGTGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
CTCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTAAAAAAGC
ACTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

95.522

100

0.955