Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPG10_RS07070 Genome accession   NZ_CP094051
Coordinates   1454969..1456282 (-) Length   437 a.a.
NCBI ID   WP_245061027.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe127     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1449969..1461282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG10_RS07040 (MPG10_07040) nadC 1450432..1451253 (-) 822 WP_245061021.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPG10_RS07045 (MPG10_07045) nadA 1451253..1452263 (-) 1011 WP_021301543.1 quinolinate synthase NadA -
  MPG10_RS07050 (MPG10_07050) - 1452253..1453056 (-) 804 WP_245061023.1 phosphatidylserine decarboxylase -
  MPG10_RS07055 (MPG10_07055) - 1453053..1453556 (-) 504 WP_000953083.1 hypothetical protein -
  MPG10_RS07060 (MPG10_07060) - 1453569..1454063 (-) 495 WP_001867294.1 hypothetical protein -
  MPG10_RS07065 (MPG10_07065) mqnP 1454056..1454940 (-) 885 WP_245061025.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPG10_RS07070 (MPG10_07070) comEC/comE3 1454969..1456282 (-) 1314 WP_245061027.1 ComEC/Rec2 family competence protein Machinery gene
  MPG10_RS07075 (MPG10_07075) - 1456279..1457739 (-) 1461 WP_245061029.1 replicative DNA helicase -
  MPG10_RS07080 (MPG10_07080) - 1457750..1459144 (-) 1395 WP_245061031.1 NAD(P)H-hydrate dehydratase -
  MPG10_RS07085 (MPG10_07085) crdS 1459147..1460349 (-) 1203 WP_245061932.1 copper-sensing histidine kinase CrdS -
  MPG10_RS07090 (MPG10_07090) crdR 1460315..1460956 (-) 642 WP_001169803.1 copper response regulator transcription factor CrdR -
  MPG10_RS07095 (MPG10_07095) - 1461044..1461268 (-) 225 Protein_1382 type II restriction endonuclease -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50195.24 Da        Isoelectric Point: 9.8860

>NTDB_id=666124 MPG10_RS07070 WP_245061027.1 1454969..1456282(-) (comEC/comE3) [Helicobacter pylori strain Hpfe127]
MKDKTFQGAFELLATPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRYAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHWRRFIDSTHSSALAGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLVRSFQIISLS
VLVFLNMLIIVHAFFPMFSPYQLFSIPLGLIFIVFFPLSLLLHAVGLGSLLDSILNMPLTIPTIFVSSPLWLLGVHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=666124 MPG10_RS07070 WP_245061027.1 1454969..1456282(-) (comEC/comE3) [Helicobacter pylori strain Hpfe127]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTGCAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGCTTAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTATTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTATGCGCAATTTTTTGGTAAAATCAAACCTTGCTC
GTTTTTGGAGTCTTTAAAGTCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACGCGAAAACAAGATTTCAAATCGCATT
GGCGCCGTTTCATTGACAGCACTCATTCAAGCGCTTTAGCGGGTAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGATTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTCCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCTTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGTGCGATCTTTTCAGATCATAAGCTTAAGC
GTATTGGTGTTTTTGAACATGCTCATCATTGTGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTACTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATAGCA
TTTTAAACATGCCTTTAACAATCCCTACGATTTTTGTTTCTTCGCCTTTATGGCTTTTGGGGGTGCATTTATTTTTAACG
ATTTTAAGTGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTGAGTGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGCTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-388)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.508

100

0.945