Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPG10_RS05515 Genome accession   NZ_CP094051
Coordinates   1138504..1138908 (-) Length   134 a.a.
NCBI ID   WP_245060708.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe127     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1133504..1143908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG10_RS05475 (MPG10_05475) - 1134605..1135390 (-) 786 WP_245060698.1 hypothetical protein -
  MPG10_RS05480 (MPG10_05480) - 1135390..1135771 (-) 382 Protein_1064 DUF1294 domain-containing protein -
  MPG10_RS05485 (MPG10_05485) - 1135846..1136043 (-) 198 WP_001869324.1 hypothetical protein -
  MPG10_RS05490 (MPG10_05490) - 1136101..1136262 (-) 162 WP_172635512.1 lysozyme -
  MPG10_RS05495 (MPG10_05495) - 1136282..1136491 (-) 210 WP_245060700.1 lysozyme -
  MPG10_RS07705 - 1136660..1136791 (-) 132 WP_280637842.1 hypothetical protein -
  MPG10_RS05500 (MPG10_05500) - 1136802..1137362 (-) 561 WP_245060702.1 hypothetical protein -
  MPG10_RS05505 (MPG10_05505) - 1137346..1137684 (-) 339 WP_245060704.1 hypothetical protein -
  MPG10_RS05510 (MPG10_05510) - 1137815..1138369 (-) 555 WP_245060706.1 tetratricopeptide repeat protein -
  MPG10_RS05515 (MPG10_05515) dprB 1138504..1138908 (-) 405 WP_245060708.1 Holliday junction resolvase RuvX Machinery gene
  MPG10_RS05520 (MPG10_05520) dprA 1138905..1139705 (-) 801 WP_245060710.1 DNA-processing protein DprA Machinery gene
  MPG10_RS05525 (MPG10_05525) minE 1139717..1139950 (-) 234 WP_000051412.1 cell division topological specificity factor MinE -
  MPG10_RS05530 (MPG10_05530) minD 1139947..1140753 (-) 807 WP_064431940.1 septum site-determining protein MinD -
  MPG10_RS05535 (MPG10_05535) ilvC 1140778..1141770 (-) 993 WP_245060712.1 ketol-acid reductoisomerase -
  MPG10_RS05545 (MPG10_05545) - 1142018..1142800 (+) 783 WP_245060714.1 NAD+ synthase -
  MPG10_RS05550 (MPG10_05550) - 1142797..1143735 (+) 939 WP_245060716.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15271.85 Da        Isoelectric Point: 9.4825

>NTDB_id=666120 MPG10_RS05515 WP_245060708.1 1138504..1138908(-) (dprB) [Helicobacter pylori strain Hpfe127]
MILACDVGLKRIGIAMLLNGVILPLEAILRQNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEYFIKLLDFKGE
IVFINEDRSSIEAYENLGHLGKKNKRLAIKDGRLDSLSACRILERYCQKVLKDR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=666120 MPG10_RS05515 WP_245060708.1 1138504..1138908(-) (dprB) [Helicobacter pylori strain Hpfe127]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTATGCTTTTAAACGGCGTTATTTTACCTTTAGAAGC
GATTTTACGCCAAAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTGTTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCGCGCATTGAATATTTCATCAAGCTTTTGGATTTTAAGGGTGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGGGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTGCCAGAAGGTTTTGAAAGATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

94.03

100

0.94