Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   MPG10_RS00010 Genome accession   NZ_CP094051
Coordinates   1589..3025 (+) Length   478 a.a.
NCBI ID   WP_245061142.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe127     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG10_RS00005 (MPG10_00005) dnaA 1..1368 (+) 1368 WP_245061140.1 chromosomal replication initiator protein DnaA -
  MPG10_RS00010 (MPG10_00010) comH 1589..3025 (+) 1437 WP_245061142.1 competence protein Machinery gene
  MPG10_RS00020 (MPG10_00020) - 3203..3955 (+) 753 WP_245061144.1 exodeoxyribonuclease III -
  MPG10_RS00025 (MPG10_00025) - 3952..4587 (-) 636 WP_000668030.1 outer membrane protein -
  MPG10_RS00030 (MPG10_00030) - 4591..4944 (-) 354 WP_245061146.1 hypothetical protein -
  MPG10_RS00035 (MPG10_00035) recG 5026..6891 (+) 1866 WP_245061148.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 478 a.a.        Molecular weight: 54842.85 Da        Isoelectric Point: 6.9189

>NTDB_id=666109 MPG10_RS00010 WP_245061142.1 1589..3025(+) (comH) [Helicobacter pylori strain Hpfe127]
MKKTLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETILNPNRPTIPRNTQIVFSSKELKELHPHQMPSLNAPIQKPQNKPHSSQQPPQNFSYPESKLGSKNPKNSLLQPL
ATPNKSSANEVKTPTNDTKPPLKHSSEDQENNLFIAPPTEKTLPNNTPNADINEHDESNENRDNGEKQAIRDPNIKEFAC
GKWVYDDENLQAYRPSILKRIDEDKQTATDITPCDYSNAENKSGKIITPYTKISVHKTEPLEEPQTFEAKNNFTILQARS
STEKCKRARARKDGTIRQCYLIEEPLKQAWESEYQITTQLVKATYERPKQDDQIEPTFYETSELAYSSTRKSEITHNELN
LNEKFMEFVEVYEGHYLNDIVKESSEYKEWVKNHVRFKEGVCMVLEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1437 bp        

>NTDB_id=666109 MPG10_RS00010 WP_245061142.1 1589..3025(+) (comH) [Helicobacter pylori strain Hpfe127]
ATGAAAAAAACCCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGA
AATCAAAACTTCGCCGCATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACTATTACCCACATATCCACTGCAATTGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGATCTTAAACCCTAACCGCCCTACTATTCCCAGAAACACCCAAATTGTTTTTTCTTCAAAAGA
ATTGAAAGAGCTACACCCGCACCAAATGCCTTCTTTAAACGCGCCCATACAAAAACCACAAAACAAGCCCCATTCATCGC
AACAACCTCCTCAAAACTTTTCTTACCCAGAGTCCAAACTAGGCTCTAAAAACCCTAAAAACAGCCTTTTACAGCCTTTA
GCCACTCCTAATAAAAGCTCCGCTAATGAAGTTAAAACGCCAACAAACGACACTAAACCCCCTTTAAAGCATTCTTCAGA
AGATCAAGAAAACAATCTCTTTATAGCGCCACCCACTGAAAAAACGCTCCCTAACAACACCCCTAACGCTGATATTAATG
AACACGATGAAAGCAATGAAAATAGGGATAATGGGGAAAAACAAGCGATTAGAGATCCTAATATTAAAGAATTTGCGTGC
GGGAAGTGGGTCTATGACGATGAAAATTTACAAGCCTACCGCCCAAGCATTTTAAAACGCATTGATGAAGACAAACAGAC
TGCGACAGACATTACCCCTTGCGACTACAGCAACGCTGAAAATAAAAGCGGTAAAATCATTACCCCCTATACTAAAATCT
CTGTTCATAAAACAGAGCCTTTAGAAGAGCCACAAACCTTTGAAGCTAAAAACAATTTTACCATCCTCCAAGCCAGAAGC
TCTACAGAAAAATGCAAAAGGGCTAGAGCGCGAAAAGACGGCACGATTAGGCAATGCTATCTGATAGAAGAGCCTTTAAA
ACAAGCGTGGGAGAGCGAGTATCAAATCACCACGCAATTAGTGAAAGCCACTTATGAGCGCCCCAAACAAGACGATCAAA
TAGAGCCGACTTTTTATGAAACCAGCGAATTGGCTTATTCTTCCACACGAAAAAGCGAAATAACGCATAATGAATTGAAT
TTGAATGAAAAGTTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAGTCAAAGAAAGCAGTGAATA
CAAAGAATGGGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAGCAACCACGAGCCA
AAAGCACGCCCTTGAGTATTGAAAATTCTCGTGTTGTTTGTGTCAAAAAGGGGAATTATTTATTCAACGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

93.111

100

0.933